Gene detail

Detailed information of ENSJQFP00000028450.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

ENSJQFT00000029544

ATGTTTAGGAAAATTGAGCTATACAGTATGGCTTGGCAGGAAGCTGTTGATCTTTCTAAGTATATTGCAAGTGCTGCTCCATTTGGAGGACCTATTGCTCTGATTCGTGATGACAAGCAATTTGTGCGGGTCCAAGGTGCATCTCTCAGTAAACCAGTCATTCATATCTTCTCCTCTGCTGGAAAAGAACTTGCTAATGTAAAGTGGGATGGAACTCCCATCATACAAATGGGTTGGTCTGTGACAGAGAGTTTGCTGTGTGTGGCTGTAGATGGAAGTGTCTCCATATATGACATTCATGGTGACTTTAAGAGAACCCTAACCATGGGCCAGGATGCTAAAGAATCCAGGGTCATTGACTGTAGGATCTATAACCATTTAGGAAGGACAGGTATTGCTGTTTTAACTGGTAACTACCACTTCTATGTGGCTAACAATGTTGGATGTGAGGTGCGCAGTCGACGGTTCTGTGATCCACCAGGATTTGATGCCCCCCCTAGCAGCTGGGTAGTAATACCTCATGACAGGGGGTCTGCTCTCCTGGTTGCAATTGACAGTCTACTGTATCTCATTGAAAAGGAGCAATGCAAGAAACAGACAGTAACATTCAGTGAACCATCTGTGACATCCATAATAGAGATGGCTCTGTCCTATAACTTTGAGTACCTGGCAATGTTTACTGACTCTGGTTTGCTGTGGATTGGATCTGCAGATTTACAGAAAGTTTACTGTGAATTCAACACAGGCTGTCCAGCAAGACCCAAGCAGTTGGCTTGGTGCGCAAATGGTGCTGTAATCTGTTATTGGGAAGATTTTATGGATGTGAGAGTTCTCCTTAATTATCTAAAGTATCAGACGGATGGTGCTGTTCACCTTGTGCAGGAGGTGGATGGAATAAGAATAATTGGTAATGAAACTCATGAGTTTCTGCAGAGGGTCCCAACCTCTGTGGAACAAGTGTTTAAGATTGGTTCCATGAAGCCTGGCGCCACGTTGTTCGACGCAGCTAAAGAATTTGAGAAAAAGAGTGCAAAAGCAGAAGAGTACATCCGTTCTATTAAAGAAGAACTACCGCAGGCCGTGGAACAGTGCATCCAAGCGGCGGGCGCCGAACATGAGCCTGCAGTACAGAGGAGCCTTTTACGGGCAGCCTCATTTGGTAAGAGCTTCCTGACGGACATGCCGCCACAAGCCTTCGAGGACATGTGCCGGACTCTGAGAGTGCTGAACGCCGTGCGGGACTACATGGTCGGCATTCCCCTCACCCACGCTCAACTTGAAAAACTAACGATGAGAATCCTTATAGATAGGCTCGTCTTGAGACGTCACTATTGTCTGGCTATAAGAATATGTGACTACTTAAAAATACCCAAAGGGGAGGGCGCAAGTCGGATTTTGGGACACTGGGCTTGTTACAAGGTTCAACAGGCTAACGTGGATGAAGAGGAGATTGCTCGAGCTATCAATGCCAAACTTGGCGAGACACCTGGCATTTCTTATTCAGAGATTGCTTCCAAAGCGGTAGAGTGTGGAAGGACTCAGTTGGCCATCAGGCTGTTGGACTATGAAGCCAAGGCTGCCGATCAAGTTCCACTTCTCATGCGCTTACGTAAAGATGACTTGGCGCTGGAAAAAGCGATCGTAAGCGGAGACACTGATCTTGTGTATATGGTAGTGATGCACTTGAAGGAGAACAGGACTCTGGGAGAGTTCCTAATGGCAATACGTCACCTTCCTGTGGCACTCAGCCTCTACATCAAGTACTGTAAAGAACAGGACCGTCGCACATTGGTAGACTTGTATTACCAAGACGATCAGTTCCTAAACAGTGGAAACGCGTATGTGCAAGATAGTTACAATGAAAAGACAATAGGGTCGAAGATAAAAACCCTCGAAAAAGCGCAGATGTCTTACCAGCAAGGAAGCTTCACTTTTTATGCAAAGGCAACAGAGGAGCAGGTGAAGCTAATGAAGCATCAGACTGAACTCGAGGAGCATTATAGAAAGACGTTTATGGATCTGTCGCTGAATGATACCATCTATCAGTGTATTCTTATGGGAAATCAGAAAACAGCTGAACAGTTCAAAAAGGAATTCAAAGTCCCCGACAAGAGGTTTTACTGGTTGAAGGTGAGAGCGTTGGCAGAAGGACGTAATTGGTTGGAATTGGACAAGTTTTCAAGGGCGCGTAAGCCTCTCATTGGATTCGAGCCCTTCTTCGAGGCTTGTCTGGAATTTAACAATACAACCGAGGCAGAGAAATATGTTACCCGTGTACAACCAGAGAACAAAGTCGCATGTTACCTTAAAATTGGGAAACTTGAAGAAGCAGCCGAGACAGCTTTTGCCCAGAAAAGTGAGGAGGGTCTGGATCTAGTTCTTGGAAAGTGCGCGACGTCTAATCGCCCGTTGTCCGCTCGCATTCAGACGATGAAAGCTCAATTAAATCAAAAGCGATAG

Transcript

ENSJQFT00000029544

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04841 all species →	Vps16_N	Vps16, N-terminal region	Repeat	Interproscan
PF04840 all species →	Vps16_C	Vps16, C-terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016534 all species →	Family	Vacuolar protein sorting-associated protein 16	Interproscan
IPR006926 all species →	Domain	Vps16, N-terminal	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR038132 all species →	Homologous_superfamily	Vps16, C-terminal domain superfamily	Interproscan
IPR006925 all species →	Domain	Vps16, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12811 all species →	VACUOLAR PROTEIN SORTING VPS16	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0042144 all species →	Biological Process	vacuole fusion, non-autophagic	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20180	VPS16; vacuolar protein sorting-associated protein 16	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.