Gene detail

Detailed information of ENSJQFP00000030809.1 in Rhodactis osculifera

Genomic Location: chr8:17512245...17541480
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSJQFT00000032034

ATGGCGGACGCTGAGGAAGAATCCGAGAATAGTAAACGCCGTCTAGACGTCAGCGATTTTGATATATTTGCGCAAAAACTACTCAAGCACCAGCTCTTATTGACTGCGCTAGAGCTCCACACGGAATTAGTGGAAGTAGGACTGGAGATTCCTCGCTTGCGCGATTTTTTCTCCAATCCTGGAAATTTCGAACGTCAATTCCAAACCACAGTGGCTTCCAGGGACTCGTCTGCATCGTCCCCTGTCATACCACGCACTTCAAGTATTGTCACCCTAGACTCACTGGACGATTTTGCCCGATATTCCGATGACGGTGTCCGTGACACTGATGAAAGAATTGCAGTTTTAGAGTTTGAACTGAGGAAGGCTCATGAAACTATAAAAGCTCTTAGGGGATCACTCACAGAGGTTACAGGAACTGAGACTCCAAGTCCGGAAAGCAACCCTGAAAGCAAAACTATGAAAGAACATGGACCTGAATCCCTGAGACCTCACGAAAAGAGAGCATTGAATTTCCTGGTTAATGAATACTTGTTGAAGAGGGGCTATCGTATGACCTCTGTAACTTTCTCAGATGAAAATGCTGATCAGGTATTTATTTTGAACAGAGaaacattttttgCTTTTTGCTCAACATTTGATGGTGGAACATGTTACACAGTTAACAATGTCAGCGCGCTGGATTTGCTGTGGCCTTTTCCCCTAAAAATGACTCGGTTGATTTCTTTTTCCGGACAGGACTTTGAAGACTGGGATGATGTTGGTCTTAACACTGCTAAACCACCTGGTCTGCTACATTTATACCGAGACTACGGGCACCACACAGTACCAGAGGTGATGCTGGTGTTAAAATCTGTCAAGGCAGAGAAAGCAAATTTGGAAGTAGAGCACAGCAAGCTTCAAGACGAGTGCAGAAAACTTCAGGAAGAAATCGGAGAGCTTAAATATGAAAATCACACACTCAGTGAAAATGTGAAAAGGCTGGAGAAAAACACAGAGACGGCGGAGATAGTCAGCGGCAGCGAAAAAGCAACCAATCACATTGAACGAAAAGACTCCATTGCAAAGAATGAAACTGAAAGTGATCAAGTTGTTGATTCAAGTGAAGTTGTTTGCCAGACGAAGTTGGCTGGTGAtcatgaaaacgaagattccGGCGGAAACGCATCGGAAGTTTCCGTTGACAGGGTACGGGCTTGTTTTGCTATATTcacgttattatttttttccaaggtTTGTAAGCTGTCCAATGCTGACGAGAACGTTGTACTTATTCTAGCCAGATGCTTACCTCATATCGTCCCTAACGtgctgttaaacaaaagggagGAGTTGATTCCGATCATATTGTGTTCGGCTATCCATCATCCGGAGACAAAAGAAAGGGATAATCTGCTTCATATGCTGTTTAACTTAATCAAGAGACCAGACGAAGACCAAAGACAAATGATTATGAGTGGGTGTGCAGCGTTTGCGAAAGTCGTGGGACCGACGCGGATTGAGGCCGAGCTGTTACCTCAATGGTGGGAACAGATCAACCATAAGTACGTTGAAAGAAGACTTCTGGTTGCGGAATCATGTGGCGGTTTGGCGCCTTATATACCGGACGATATTCTCAGTTCCTTGGTATGGTCCATGTTGAGACAAATGCTTGGCGATGATCGAAACGAAGTTGTCCGCGAGGCGGCCACGAAGAGCCTGGCGCTAGTGGTAGCGTTTATGGAAAATACCGACAAATATGAACAAGCGCACGAGCTTCTCTTAGACACGCTCTTTGACTCGGCAGAAAAAGTGTCAAAAACGTCTCGAGATATCTACCTTCCGTCATTCGCTACTTGGGCGAAGGATCTTGATAGGCTGCAGTCTCATCTGCTGACGTCACTGTTGTCCAACTTGGACAACAGCTTCGATGACTTAGATCAAGTGCAGGAATTATCAGAAGAAGGAGAAAATACcgagaaaataaacaaaactctgGAGACCATTCAAGTGAGACTTCCTCGCTATATTCAGGCGTTCACGTCTCTAATTCCTGCTTTGTTTGCTTCAGTTCTTCAATCAGCACCATTTGCAAAAAGACCAGAGGCTGTTGAACGATACAACGTGCCAGtttcaCCAGATAGGTTTTTCCCGCCATCATCGTCTTTGACGAACTTAGAGACAGTTCTTGGCGGCAGTCAGTTGGTCGCATTTCATGTTCGTCGATTTGACAAATACGTGACGGAGGAGCAAGTTGAATTATGGGATACGTTATCGTGGGTACATTATGAATGTTTGCCAAAACTCTGTGCTATTGTAGGTAGGGTACATGTTTCCATGACGGAATGTGTAAAGCAGTTTATAATGTTATTCCGTTGGTTGTGTGTCACTTTTGGCAAACCTTATTCAGACCTTAAGGTGAtcttatttcttcctttaaattttcttttatctGCAGCGGCAACAGGTGCGTCCTTGACCAGTGCCTCTCTGCCTGTTTTGGTAGCGGGAGTCTTAGGATGTTTTGACGCGGAAGAAGACATGTTGGAGCTGACGTCATTGCTTCGGCAATCGGTCATTTCATTGGCAGAGGCCTCGGCGCCACTCGATGGTCCGGTTATAATGTACCAGGAGCTGACCACCTTTTCGCGGTACCATCAGCTTCTTATCGGAGTGCTTTGGGAAATTGTCGTGCACTCTGAGGCCGCTATCCGCTGCTGTGCGGCTCCATTGTTTATGGTTTTAATAAAAGGTGTTGACCTGGATCTCATCAGCAGACAAGTTCTTCCCGCGCTTGTGACGTTAGCCTCCGATTCACACATGTCTGTTCGGACGGCATCGATTCCTGCATTCGGTGCAATAGTCGAAAATGTCACGGATAAGATGattttagAGAAAGTGTACGTCCAGTTTCAGTCGTTTCTTGAAGATCCACAGTACAGAGATCAGCATGAACTACAAACAACAATGATCAGAACGTTTGGTAAAGTAGCGCCACATGCTGAGCCGCATTTCAGAGATGAAGTGCTGCTGCCACGGTTGGCTGTCATGGCGACAATAAACAACCAGTTGGAAGATGAAGACAGGAAGAAGAAAGTTTTGCTTGAACTTCTGGAGGCATACGTGTCTCTGACGTGTTGCTTTATTTCGATTGATGTgctcaatgattatatcatccCAGGACTACGTTCAGTCAAACAGGACATCACATCACTTGCGCCCGATTATGAGGAGACAATCGTCGTGCTTCTAAAGGAATGTGAAACTAAGGTTGAGCAGAAATCTCTTCCAGCTAGCAGCAGCAGAATTGGACATGACATCAAGAACACCTTTATGAGCGGATTCAATCGCTTAAAAGATGCCCCACGACCCAAGATGGCGgatattttcaagaaaaaagatcGTGTGGATTCGTGA

Transcript

ENSJQFT00000032034

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004191 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR040362 all species →	Family	RAB11-binding protein RELCH	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32059 all species →	RAB11-BINDING PROTEIN RELCH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0032367 all species →	Biological Process	intracellular cholesterol transport	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26154	RELCH; RAB11-binding protein RELCH	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.