Gene detail

Detailed information of ENSJQFP00000032074.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

ENSJQFT00000033360

ATGATAAGAACTCTTGCATATACGGAGAGGTTTGACCAGTTTATTTTAGCAAACGACATACAGGGAGAAAAGAAGATCGTGGCTACATTTCTTACTATCGTGGGAAGTAAGACATACAACTTGCTACGAGATTTGCTAGCCCCCACCAAGCCTTCATCAAGAAAGTACAAGGAGCTGGTAGAGGTCCTGGCAAAGCACTATGACCCGAAGCCGTTGGTCATAGCGGAAAGGTTTCACTTCCACAAGCGAGACCAAAACGAGGGACAAAGCGTGGCGGAATTTTCAGCAGCGCTGAAGAAGGCCTCAGAAAGGTGCGAGTTTAACGCGTTCCTCGAAGAAGCCCTTATAGACAGATTTGTCTGCGGCCTAAGGAGcaaaaatattcaaaagaaGTTATTGGCGGAAAAAGACCTTACTTGGAAAGAGGCCTGTGAAGTAGCGCACGCCATGGAGTCGGCTGAACGTCAAGCGAACAAATTCACCTCAGGAATTCAAGGAATGAACACCCTGAAATCACGTCCAGCACGCGGTCAAGCAGGACAAAGGCAGAGAAAGGAACAAGGAAAACCATGCTCGGAGCAAACGTCAGAGGATGAACGCGAAATGGGCGAGTTGTTTAAAGTCGGTGATGGAAAGTCAGAACCGTCAATCGTAATTCCTGTGAAAATCAATTCCGTTGATCTAAGCATGGAGTTGGACACTGGCGCTTCGCTCAGCGTAATTTCCGAACAGCAATGGAGGGACAATCTGGACAAATTTGAGCTGGAAGACTCAGATGTGAGACTCAAGACATACACCGGAGAGGAACTTAAAATAATTGGACAGGCAATGGTGAAGATCAATTACGAAAACCAAGAGCATGAACGTCCTATTCAAGTCATTCAAGGGAATGGACCAGCATTGATCGGCAGAAATTGGCTTAGAAGCATCCGATTGAACTGGGAGGCAATTAAGAGGGTATCTGACGATCTAGATGACGTCCTAATGGAGCATAGAGAAGTATTTAAGGACGAATTAGGTACGATGCGCGAAGTTAAGGCTAAATTGCATATTAAACCAGGGTCAACCCCTAAATTTTACAAACCACGTTCAGTACCGCATGCTCTCAAAGGTGCAATCGAAAAAGAATTAGATCGCTTAGTAGGGATGGGCGCATTAGAAAAAGTGCGTTACTCTGAGTGGGCGGCACCGGTTGTAGCTGTCGTTAAACCGGATAATAGTATTAGGTTATGTGGCGATTACAAAGTCACAATCAATTCAGCCCTTGAAGTGGATCAGCACCCACTACCTAATCCCGAAGAATTATTCGTAACCCTGAGTGGTGGGAAGAAGCTTTCTAAGTTAGATCTTTCTAGAGCGTATCAGCAAATATTGCTCGATGAGGACTCTAGGGAATTCGTCACTATTAACACGCATAAAGGATTATATAGGCCCAGGAGATTGTCCTTTGGCGTCGCCTCGGCGAGCGCCATATTTCAATCAAAAATAGAGCAAGTTCTACAGGGAATACCCATGGTGGTTTGTAGGGTTGATGACATTTTGGTTTCTGGCAAGACTGACCAGGAACATTTGCGTAATTTAACTGAGGTTCTGTCGCGTCTAGAGAACGCAGGTCTAAGGCTAAAGTTAGCTAAGTGTCAATTCATGCAGCCCTCAGTAGAGTATCTTGGATACCGAGTGGACGCGGACGGTTTGCACGCAATCGACGAAAAGGTCGAGGCAATTAGAAATGCGCCAGCGCCTGCAAATCAGCAGCAACTTAGATCATTTTTGGGTATGGTTAATTACTATGCAAAATTTGTGAATAATTATTCGACTATTACTCATCCGCTACACGAGCTTTTGCATAATGACGCAAAATGGAAATGGGGCAAGGCCCAGCAGAATGCATTTGACGAGTTAAAGGATAAGCTTTCAAGTGCGCCTGTTTTGATGCATTACGATGCCGAGTTACCGCTTAAATTAGACACAGATGCTTCGGACTACGGTGTCGGTGTGGTCATTTCACATATGTTACCAGATGGTGCAGAGCGACCGATTGCTTACGCCTCGCGTACGCTAAGTAAGAGTGAGCCTAACTATGCACAAATCGAGAAAGAAGCACTCAGCATTATTTTCGGAATTAAGAAATTCCACCAGTATTTATATGGTCGTAAATTTTTGTTAGTCACGGATCATAAGCCATTGACAAGTCTTTTGGGTCCAAAGAGTGGAATTCCAACCCTGGCAGCCGCAAGAATGCAGCGGTGGGCACTTTTGTGGTCAGCATATCAGTATGATATCATTTATCGCTCGACGGATAAGCACGCGAACGCCGATTGCTTATCGAGATTACCACTTGAAGTTCTTAACCACCACGCGGATGTCGATGACGCAACCATGATAAACAAATTGCAAATAGAAGCAGCGTTAGGAGCCGATCACGTTCGAAATGCAACAAGAGCCGATCCTATTCTTTCAAAGGTATTAGAGTACACACTAAAAGGATGGCCGGAAATTATCGAATCAGAGGCGATAAAACCCTATTTCAATAAGAGAAGCGAAATCACTACCGAAGATAATTGTTTGTTGTGGGGAATTAGAGTAATTATTCCTGAGATATTGCGAGATCAAGTTTTGACTGAGTTACACACAGGACACCCCGGTATAGTTCGGATGAAGTCACTCGCAAGACTTCATGTTTGGTGGCCCGGTATTGATGAGGATATTTCGAAGTTGGTTCGCAGTTGTTCTAAATGTCAAACGTCACGCAATAAACCACCACAAGCACCACTTCACCCGCGGGATTGGCCAAGCAAGCCTTGGCAGAGAATACACGTGGATTTCGCAGGACCATTTTTAGGTAAAATGTTTCTTCTTGTGGTCGACAGCCATTCGAAATGGGTCGAAGTAGAAATAATGTCAAACACGGTGAGTGGAACAACGATCGAGAAACTCCGTGACATGTTCGCACGTTTTGGATTGCCAAAGCAATTAGTAAGCGACAATGGACCTCAATTCGTGTCACACGAGTTCTCGGAGTTCATGAGAAAGAACGGAGTAAAGCATATCCGCGTGACCCCATACCATCCTAGATCAAACGGACAAGCGGAAAGATTCGTTCAAATTTTCAAGCAGTATTTTAAGGCGGAAGGAGGAGGTTGGATTAAGCAAAAATTAGCGCAGTTTTTGTTCAGCTATCGCAACACGCCTAACAGCACTACGGGACAGACCCCAGCCGAGTTAATGTTAAAGCGTAGACCCCGCACGCGACTCGATTTGCTGCGACCAGACATCGAGAACAAGACTTTGAATAAGCAAGCagatcaaaaattcaaacacgaTAAGCATTCTAAAGAGAGAGACTTTCTCGTGGGTGAGCCGGTTCTCGTACAGAATTTTCGAGGCGAGCCGAAATGGTTAAAGGCAACTATCATCGAGCGAACTAGTCCCGTATCTTATAAGACTCTCGTAGGTGAAGAAGTATGGAGGAGGCATGCTGATCAAATCCATAAAAGACCATACGATGGTGTTCAGGaaagcactgcaaattctcaagAGTCTAATGTTGCTATTCCAAGTACCTCCGAAAGTGCACCCGTTATCAACACTGAACGCTCACAAACGCATGAACGCGCGCCCGAAGCGATTTCGGAAAGTAAACAAAATGCTACGCCTAGTGATGCCTTAGCCGAACCAGCAGCTGGCCCACTAGATCCGGAACCTCACGCGCGATATCCAACACGCGAGCGTAAACCGCCAGTAAGGTTAGGTTTTGATAAATGA

Transcript

ENSJQFT00000033360

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00164	OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component	EC:1.2.4.2	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.