Gene detail

Detailed information of ENSJVNP00000001098.1 in Echinopora horrida

Genomic Location: :...
NR annotation: XP_020613482.1, pre-mRNA-splicing factor RBM22-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q6P616	Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis OX=8364 GN=rbm22 PE=2 SV=1
Q9NW64	Pre-mRNA-splicing factor RBM22 OS=Homo sapiens OX=9606 GN=RBM22 PE=1 SV=1
Q4R4J1	Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis OX=9541 GN=RBM22 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039171	Family	Pre-mRNA-splicing factor Cwc2/Slt11	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14089	PRE-MRNA-SPLICING FACTOR RBM22	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0036002	Molecular Function	pre-mRNA binding	Interproscan
GO:0071006	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan