Gene detail

Detailed information of ENSJVNP00000013076.1 in Echinopora horrida

Genomic Location: :...
NR annotation: XP_020610332.1, lupus La protein-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P10881	Lupus La protein homolog OS=Bos taurus OX=9913 GN=SSB PE=2 SV=2
P05455	Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P32067	Lupus La protein homolog OS=Mus musculus OX=10090 GN=Ssb PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08777	RRM_3	RNA binding motif	Domain	Interproscan
PF05383	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006630	Domain	La-type HTH domain	Interproscan
IPR002344	Family	Lupus La protein	Interproscan
IPR014886	Domain	La protein, xRRM domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR045180	Family	La domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11090	LA, SSB; lupus La protein	-	Systemic lupus erythematosus	ko05322	deepkoala