Gene detail

Detailed information of ENSJVNP00000034205.1 in Echinopora horrida

Genomic Location: :...
NR annotation: XP_020601403.1, vegetative cell wall protein gp1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSJVNT00000034453

ATGCCACCCCTGTCTGGTGTCCCGGTTCCTGTTCTCACCCTTGATCAGGAAAAAGCCTTTGACCGTGTTGAACGGTCTTTCATGCGCGAAACTCTGCAGACCATGGGTTTCGGTGGCTCCTTCGTGAGTTGGGTGGACCTGTTTTATCATGATGTTCGTAGTTCAGTAAATGTCAATGGTTACCTGTCTCAGCCCTTTGTTTTGTCTCGTGGTGTGCGTCAGGGTTGTTCCTTGTCTCCATTACTTTATGTCTTGGTCTCTGAGGTCCTTGCTGCCTCCATTTGTGCCAACCCGCGTATCTGTGGCCTTTCTCTCCCTGGAGTTCCTGCTCCATTCCCTCCCATTTCTCAATATGCAGATGACACGTCCATTATTGTCTCTTCTGATGACGCCATCAAAGCCACGTTTGACACGTACTCTATCTATGAGAGGGGCTCTGGCTCTAAGCTAAACCTTTCTAAGTCAAAAGGTTTGTGGCTTGGTTCTTGGAATGTTGGACTGTGTTTATGTCTTATTGATTTTCTTCTTGCTTCAATGCCACTCCTGCTGACGTTCTCTCTTGTCCTTTTGATTTTGACCCTAAGGTCCTGCCCCCCTTCTACAAGTCACTTGTCCTGTCCTGGCGTTCGCTTCCTCTTCGACACTGATTGTCAGGTTATTGATCTTTCTTGGAAGATCGCTCATGGTGTTTCATACACGGCAGCTCGTCTGGTGTCTTTTGGGTATGACTTCAATACCTCCTGTTTCTGTGGTCCAGTCTCTGAGACCCTTGAGCATTTGTTTTTTCATTGTCCCCTGGCCTCATGGAAGCCCTGGCCAACCGCACTGTGTTTTTGGTTCTTTCGGTCGGCTGTGATGTCTTTTAATGAAGATCAAGGAATTAATCTGGAAACTATTTCAAACCAATCTGGTGATACTCTTCTTTTAGAAGACGACAGTGACTACGTTGGCACTGCGGAGTACGAAACATATGCGGCTAAAGCTTCCCGTGGAGAATATATTGGCCATGACCGTTTTGTTACTCCATTTGAGCGAGAACACTTTCACCAAAATAATATTACTCCTGACCGCCCTTGTACAACATATTTCTCTGCCAACCACTTCTGCGACTTGAAAGAAGTATTTCATACTCGGAAGAAATACAACTTTCCGCCTAAAACAATCAAGTGCTTACAACGCTGTGTTTCTGGTGATATGTTAATTACCTTCGCCACCATGGAACTCAAAGATCAGTTTCTTCACAAGAGTTTTATTCAATTTCGCAACGGGACGTCTGTTATTAATGACGACAACCGCCCTTTAATGTATGAACTGCCGGATGAACTGCCGGATGCTGCAATTACTCTGAGGTTAAAGAAATACTGCTCTCTTGTTTCTTCACGGCGTGGTAAATTTTCTAATTCGCATGTTTACAACGGAATTCATCACTATCGAGTGCGTGTTAAAGAGCCGAACCTGAGTTATTTACGCTTTGGCAAATTCCTCATGCGTTTGTCACACGATGGCCAACAACACATGTGCCGCCATTGCAATCGCGCTGGTCACTTTGCCAACGAATGCCGAAATGTTGTTTGCTTTACTTGTGAGGAGTTGGGTCACCTATCACGCGATTGTGAAAATGACGAACGTTGCTGCATTTGTAAAAGTACCGATCTCCTTGCCCGGTGTTGCCCGTTCTCTTGGTACCAATCCCTGCCCGTTCCTCGGGATGCCAGATCTAGCTCTCACTGCGATGAAAATGTTGCTGACTCTCACGATCCTGCCGACTTAAATGTTATTCCATCTGAAGATATTAGTGATTCTGATCTCTTAGCTGCTACTACCCAACTCTCTGCCGCACCTTCTGGAGATGTTCAACGCTGTCCGTTTTCTTGGTACCAGTCCTTGGTTGCTTCTCAGGATACCAGACCTGAACTGCACCAAGCTCTCCCTGCAGATGAAAATATTGCCGACTCTCGTGATTCTACTAATCTTAGTGTTTTCCTGTCTGATGATATTCATGATTCTGAACTTTTGGCTGCTACTTCCCAGTCCCCTCCCGCGCCTTCCGGCAAGCCTTCTGGTGAATCTCCTGGACCTCCTAGTGAATCTACTGGTGAGTCTTCTAATGAGACCGCTACTTCTAGCGTTTTGGATGGCCGCGGCTTCATCTGGGAGCAAATTGCTGATCGCTTACATAAACATGGAGTAGTACCTAGTCCCTCTGATCCTCCAAGTACACTCCGGCTGGATGTGGACACGATGTCCCCTGCCTTACTCCAGTCCACTCCTGATGACCCTCCTAGTGACCCTGGTGTCTGTTGA

Transcript

ENSJVNT00000034453

Protein

Uniprot

Uniprot term	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P0CV25	Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan