Gene detail

Detailed information of ENSJVNP00000034888.1 in Echinopora horrida

Genomic Location: :...
NR annotation: CAH3044931.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSJVNT00000035147

TGTTACAAAGTTAGTTGTAAACATCCCCGCATAaaacatGTTAGGGTGTGTCGAGAGTTTCCTGTTCAATGTACTAACAAGTGCGGTTTAAGAGATATTCCACGAAAAAAGcttGAAGTTCATGTTCGCGATGAATGTCCTGCAACCGAAGTTCAGTGTGAATTCAAGAACTTAGGATGTGAAGAAGTGTTTCCAAGATCAAACGCTCATTCTCACTTGGAAACTCATGTTGAACGTCATTTGGACCTAGCCCTCCGCGGCCTTGAAACCAGTCACAATCAACTTCGCGCGCTTGCTGGCCTTGTTAGGGAACAGTCGCAAAAGATagagaaacttgaaaaagaaatgTCCAAGGTTAATGAACAATCACAACAGATAGAGGAACTACAGGAAGATATGACCGAGAACTATGCTCCGTTTGTATGGAAAATCCCTAACTTTCAAGCCGTTCATGAAAAAGCAGTGGCAGGAGAACAAGAGGTTGTGCTGAGCGAGTcgttttatttgtttaaaaacGGATACAAGCTGAGAATGAAAATGATGCCTAATGGAGGTAATACACTCGACCCTGTCGCGCATAAAGAATGTAAAGGAAGATTTCTGTCGCTCTATATCAAACTTATTCCTGGAGAGTATGATTCGATATTACCGTGGCCATTCACGGAAAAAGTAAGAGTTACGTTGATTGATCAATATGTGCGCAAGGACATGAGAGAAAACATATCGCTTGTTATTGACTTTAGCGACCACGCGTATTTTCGTCCTCCTGTTGAAAATGATGTTGGATATGGCTTTCCGGATTTCGTCAGCCAAGATATTTTACGATCACGATCGTATGTTAAAACaaatacaatttttttaatGGCCAGTCACGCAAGACTGAATATTACTTCCTGTTTTTCTTCGAAAGCGAAAGCAATTGAAATGGCGACGGAAAAAGATGTACTTGAGCTAGGCGGGTATGATTACGAGTTCACAAGTAAAGTCCGTGAGGATTGGGAATGTCTTGTTTGCCATTTACCATTGAAGGATCCGATGCAGATTGTGGGATGTGGACATAGACTTTGTAACATCTGTCTGGAATCCCTGTTTAGTTCCCCTTCGCCGACATGTCCAGCAGACGGTCAGCCTCTGGCACGTTCAGGCAAGATATTTCCAGATGCCGGGTGTCATCGCCAAATTCTGGATCTTACCGTGAAATGTCCTCACTCTAGATGTTCATGGACTGGAAAACTGCGTGCTGTGGAGaAACACCAATCAGAATGCCTCTTCAAAGTGGTCAAGTGTTCAAACTCATGTTGTACAAAAATGCTCAGCAAGCGAGACATGAAAACCCACGAGACATTAGAATGTTCCTGGAGGAAAGTGAACTATGAATATTGTCAAGAATTAGTCATCATGAATGAAAAGCAGGAACATTTTGACATTTGCCGAAAGTTTCCTGTTCTGTGCACTAACAAGTGTGGCCCGAGAGATATTCCACGAGAAAAGCTTGAGGTTCATGTCCGCGATGAATGTCCTGCAACCGAAGTTCAGTGTGAATACAAGAACTTAGGATGTGAAGCAGTGTTTCCAAGATCAGACGCCAAATCCCACTCACGAACTCAAATTGAGAGCCACTTGAACTTAGCCCTCCTCGGTCTAGAGGCCACTCAGCATCAAGTTTGTGAGCTTGTCCCCGTGGTTAAGGATCAGTCACAACACATAGAACGACAGTCACAACACATAGAACGACAGTCACAATACATAGAGAGATTGTTATCTAAGGATGAGGAACAGTCACAACAGATAGAGCGACAGTCACAACAGATGGAGAGATTGTTATCTAAGGATAAGGAACAGTCGCAACAGATAGAGCGACAGTCAGAACAGATGGAGAGGTTGTTATCTAAGGACAAGGAGCAGTTACAACAGATAGAGCGACAAACGATGTCCCTATTTCAGAATCATCCATTGCAGAAGGAAATACACAACAttagaaatgtttttcaaagGGCAAAACATGATCGTGAAACACTAAGCTTAGTCAGTGAACCGTTGTATTTGTTCGAGTGCAGTTATAAATATTTATTGCAGATCAAAATATCCCCAGACCAAATAGGATCTTTCGTAACGTTACATTTGCATATCAAAGTAGTTCCTGGAGAATTTGATGAGTTGTTATCATGGCCTTGCAAGGAAAAGGTGCGTGTTACGTTGGTTGATCAGGACCCGCTGGTGGATAACAGGAGAAACATATCACATGTGATTGACTTTGAAAAGGACAAGAAACCCTGCTATCGGCCACTACGCGATGATCACCATGATTATCGTCCCATTCTAGTGTTAAGAAGCGTAGATTTACATCGCGGATCATACATCAACAATGACACCATTTTGATAAGGGTCAATAGAGAATAG

Transcript

ENSJVNT00000035147

Protein

Uniprot

Uniprot term	Description
O00463	TNF receptor-associated factor 5 OS=Homo sapiens OX=9606 GN=TRAF5 PE=1 SV=2
P39428	TNF receptor-associated factor 1 OS=Mus musculus OX=10090 GN=Traf1 PE=1 SV=2
Q13077	TNF receptor-associated factor 1 OS=Homo sapiens OX=9606 GN=TRAF1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21363	TRAF3_RING	TNF receptor-associated factor 2/3/5, RING domain	Domain	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR049440	Domain	TNF receptor-associated factor 3/5, RING domain	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan