Gene detail

Detailed information of ENSKFPP00000001098.1 in Condylactis gigantea

Genomic Location: chr10:4380656...4390949
NR annotation: XP_031549222.1, signal recognition particle subunit SRP72-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSKFPT00000001210

GGATTCCcagaaaaaatttcaaaatcataGATTGGTGAACATTTTTAGAATTTGACCAAAAGACTGGTTGTGTACAGGCAGGTTCAATACACATGAATAGTAATGTCACGGTGTAAGACGTCATTGACGTTGAGCTACAAGATATTATGGATTTGATAATGACTAGTAGACGAACATAGAGCAGTTTGACTTTAGAGTAACTGATACAAACGAAGAAATTAGCCTCTTTTCCGCTTTCGCGAAAAAAGGTATTCAGTAACGCCACATGCGTCACGGTAAATAAGCAAAAATATCATCAAATGGCAATTTTACAAGAGAAACCAAACGACCCTGATGCCTTTCATTGTAAAGTGGTCTGCTTGATTCAACAGTCTTGCTTTCGTGAAGGATTAGACGTGATCATCTCCGGCAGCAGGAAAGGAATCAAAGAGCTGCCCTTTGAGAAAGCCTACTGTCTATACAGACTGAACAGAACTGATAAAGCACTTGATATCCTGAAGACCATACCAGAACAGGGACCAAGAGAAAAGGAACTACTTGCACAAGTGCAATATCGTCTTGGGGAATTTGATGAGTGCAGGAATATCTACAAAGATTTGATTAAAAATTCTCAGGATGAGTATGAAGATGAAAGAGAGACAAACCTgtctgctgttgttgctgcttcCAATCAGTGGGGACATAAGAAATTGGTAGAGAATGGTCTGCGTGATAACACCTATGAATTATGCTACAACTCTGCCTGTCTGTCCCTTGCAAATAATGAGTTTCAGTCAGCAAAGAACAAACTCAACCAAGCTCAAGcTCTCTGTCGTAAAAGTCTTGAGGAAGATCCAGAAACAACTGAAGAAGAGATTGATGCTGAATTGGGTGTTGTAAGAACCCAGCTTGGTTACACCCACCAAATGTTAGGATCCAATGATGAAGCAATGAAACTATACAACCAGGTTCTGAAATCAAAGCCAAATGATGTTGCTCTTGTGGCTGTTGCATCTAATAATGTGATAACATTGAATAAGGAAAGAGATGTGTTTGATTCCAAGAAGAAAGTGAAGGCAACAACAGTGGAAGGTCTAGAGAACAAGCTCACTCACCAACAGTACCAAAAAATGCAGTTCAATAAATGCCTTCTCTTTCTGTTCGCTAATCAGCTGGAAGCTTGTGGAGCAATGATCAACTCACTGGAAGAGAAGTACAAAGACAGTGATTTTCCTTGCTTGATGAGGGCCTCGTTGTCCTACAGAGAAAAGCAGTACGACAAAGCTACCAAAGTACTCCAGGAGTATGCCAATAAAAACCCTAACGCAGCTACGAATGTGAAGATGACATTGGTGCAAATGTATCTCTCTCATGGCAGCATAGTGGATGCTTGTTCGACATTGAACTCAATTGAAGAACTAAAACATAAACCAGGAGTGGTTTCTGCTTTAGTTACTCTTTATTCACAGCTTGGAAATGTAGACTCTGCCATCTCTGTTCTTGATTCTTCTGTTAAATTTGCTCAAGAAAACAAGGGTGTCCTCAGTCAGGCTGAAATTATTTCTCTCATGCGTGAAAACGTGGCCTACAAACTCTCCCATGGTCGTGCAAAAGAAGCTGTAGAAATGTTAGAAAAACTTCACAGggAAGACCCCAACAACTTAAAGACCCTTGCACAGCTCATCACTGCTTATTCTCAGTTTAACCCCAAAGAAGCTGAAAAACACAGTAGAAAACTGCCACCTCTAGAAAATGAAACCAGCATTGATGTGGATGCTTTGGAAACAAGCAGTGTAGGATCTGGGATGAGGTATGGGCGAAGAGTGGGACGTACACCAGACGATGCAAGCACCAATGAAGAAAGAATGGACATTATTATCAAAAGGAAACGAAGAAAGAGGAAGAGTGGTAAACTCCCAAAGAATTACAATCCTGAAGTTGACCCTGACCCTGAACGTTGGTTACCCAGAAGAGAAAGATCTTACTACAAGGGCAAGAGACAAAAGAAGACTGTAGTTGGTAAAGGCACCCAAGGATCTGCATCCGCTGGAACTGAATCGCCTAAGTCACCAGGAAGTCCAAAGGCGTCTTCCCCTCCAGGTACACCTGGAGGAGGTACTGCCGTTCCCTCGAATGTTGTTCCACCAAGACAACAACAGCCACAagcagcaaagaaaaagcaacgaccaaagaagaaaaagggtGGATGGTAGATTATTACAATATTTTTACCTAAAACCATTAGATGTACTACTTGTGACACTTGTATACAAAAAGTGGGAGTACATTAAACAGTGACATCTTatgatgaataaataaaagaaacatcTACTAATATGTTTGAagcatttatttttctcaaatttgaGATAATACTGCCAATGTACAATTATATACAGATACAATAATGCTTGATAATTTTCCagtaattcatatcttcagtTCTTCTTGACTATTTTTCCTTTGGCAAGAGCTATATCCTCTCCTGTATATGCTTGTAGCCGATACTCTAAAGCTCTCTTTTCATCCAGTTCCTTCTGAAAATTCTGAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33731	Signal recognition particle subunit SRP72 OS=Canis lupus familiaris OX=9615 GN=SRP72 PE=1 SV=3
O76094	Signal recognition particle subunit SRP72 OS=Homo sapiens OX=9606 GN=SRP72 PE=1 SV=3
P49965	Signal recognition particle subunit SRP72 OS=Schistosoma mansoni OX=6183 GN=SRP72 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005803 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17004 all species →	SRP_TPR_like	Putative TPR-like repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF08492 all species →	SRP72	SRP72 RNA-binding domain	Domain	Interproscan
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031545 all species →	Repeat	Signal recognition particle subunit SRP72, TPR-like repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026270 all species →	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013699 all species →	Domain	Signal recognition particle, SRP72 subunit, RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094 all species →	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0048500 all species →	Cellular Component	signal recognition particle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03108	SRP72; signal recognition particle subunit SRP72	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →