Genomic Location: chr10:3437148...3441429
NR annotation: XP_031554331.1, cation channel sperm-associated protein subunit beta-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000002133 |
| Transcript |
| ENSKFPT00000002133 |
| Protein |
| ENSKFPP00000001949.1 |
| UniProt accession | Description |
|---|---|
| Q9H7T0 | Cation channel sperm-associated auxiliary subunit beta OS=Homo sapiens OX=9606 GN=CATSPERB PE=1 SV=2 |
| A2RTF1 | Cation channel sperm-associated auxiliary subunit beta OS=Mus musculus OX=10090 GN=Catsperb PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008107 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15149 all species → | CATSPERB | Cation channel sperm-associated protein subunit beta protein family | Family | Interproscan |
| PF21548 all species → | CATSPERB_2nd | CATSPER subunit beta protein 2nd domain | Domain | Interproscan |
| PF21541 all species → | CATSPERB_1st | CATSPER protein subunit beta protein 1st domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028748 all species → | Family | Cation channel sperm-associated auxiliary subunit beta | Interproscan |
| IPR048789 all species → | Domain | Cation channel sperm-associated protein subunit beta, C-terminal domain | Interproscan |
| IPR048788 all species → | Domain | Cation channel sperm-associated auxiliary subunit beta, 2nd domain | Interproscan |
| IPR048786 all species → | Domain | Cation channel sperm-associated auxiliary subunit beta, first domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14705 all species → | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT BETA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005929 all species → | Cellular Component | cilium | Interproscan |
| GO:0036128 all species → | Cellular Component | CatSper complex | Interproscan |
ENSKFPP00000001949.1.Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |