Gene detail

Detailed information of ENSKFPP00000005950.1 in Condylactis gigantea

Genomic Location: :...
NR annotation: XP_031563912.1, LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein M-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKFPT00000006410

CGTGTGTCTTCCAGTGCCTTGAAAGACTATCGAGTTTATGTCTCTAACATTCCATACAACGTACGATGGCAAGATTTGAAAGATTACATGAAGAAAAggCTGTGGGTATGTACAGCATTTGTAACATCTTACCATTATCAAGAACATATGCTTTGCAGTCATTGATCAGAGTCCAAGtagtgaaaaatattaaaataaaatgagagAGAAGTATTTTAATGATCCGTTaaagcctcttttcagtgttaAAATATGCAGCACAAATAATGGTCAAGGACCGTGTAGAAGAAGACAGTAGAATGCATAGATCAAGACTTCGTGGTAATACCATTGCACAGAGCCCCCAGCAGTCAACTACAAGTTCTTTACTCCAAGGTCTACAGGGTCTTCAAGGAGTACAAGGGCTACAAAATCTGCTGGGCATTGCAAACACTGGCAGTATGGCTAACAAGAATGATCCCTCATCATGTACAGTGTTTGTCAGCAATCTGGACTTCAGAGTCAACTGGCAAAAGTTAAAAGATGCTTTCAAAGTTGCAGGTAATGTTGTAAGAGCCAATGTCAAAGAGGACGACAATCACAAATCCAAAGGCTATGGAACAGTACAGTTTGAAACTCCAACAGAAGCAATGAGTGCTGTCTTACTGTTGAATGGTCAAATGATAATGGACCGAGCTGTTACTGTCAGGATGGATCGCAACGCtacaggaggaggaggaggagcagGTTTCACAGGAGTGGGATCACGAGGATCAAGTCAAGCTTCTGCTAACCCTCTTGCAGCAACCGGAGGCCAATTAGCAATCCTTAACATCCTTCAAAGCCTTCAAGGGCTGTCAGCCTTGTCCCAGCTCAGCAGTCTGGGAGCCAACTTAGGAAGTCTTAGCAACCCTTCTTCCAATCAGTCTTACAGTGGGTTGACATCAATGCCGGCAGCTAGCAGTACAGCTAGTGCAAGTACAATGGGTATGGATGCCACCAATCTTGCCGCTTTAACTAACCTTAGTGGCATGATGAACCAACTTGGGACTGCAACATCTGCATCTGCCAGCAACTATGGAACAAGTAGCTATGGTGTCGGAGTCAGTGGCTCTTCACAGAATGAATGTAGCTCAGGAAAACAGATCTTTGTCAGGAATCTTCCATGGAAGTACACTTGGCAAGACCTTAAGGATAAATTCCGTTCTGCAGGTAATGTAACTCGAGCTGACATCTTGACTGAGGCTGGTGGTCGATCCAAAGGTTGTGGCATTGTGGTGTTTGACACACAAGAAGAAGCACAGAGGGCTATTGCGCTGTTTAATGGTGCTTCATTTGATGGCAGAGAGATTGATGTGCGTTTGGATAGGTTTGGTTGAGTATTGGCTCACTGAAAATCACACTACCTACTACTTTGGTTCTCAGTTGTACACACTTTGTTCTTGGATTGTTGATGTTGATTTTAGTGCAATGGcagaaaaaaatcttgttaTTTCCTGTGACATGATGGCTGCATACTTGGTTTGAAGAAGAGTTTTTTGACAGAAACAAAGAGGCATGAAACTGGCATTGGAATAGTTCAGAACAGCCTGGGAAGATACTATGGTTGCTTTGATATATAGTTGGAGATGTGTTTGTGAAACAGTTGCTGTGGAGCAGTTTGGTGTGCTGGAGATTCTTTTCGAGACGAAAACTTTCCTCAAACCTTCAGTTACTGGTTGAAGAAAGATGCTGAACTTGGAACTTGGGAGTTGGGACCTAGGAAGCAAATAGGCTGTTGACTCACTTGAAGATCTTTGGTTTTGGAAAGTGTCggttgaagaaataattctctGGGAATCTGCTAAACTTGATCAGCCTTTGAGGATAAATAACCTGCTTGTACCAAAGTTGTGGAATGGCAGCTGGATTGAGCATTCTTAAGATGAAAAGTCTGGCTGagttgaagaaataattctgTGGtttccaagaaagaaaatgttgaaatgACAGAACTGGAGGTGCTTGGGTGTGGTGATTACCATAGCTATCTGATTCCAAAGATGAGAGAAAGAGAGGGTTGGAAATGGAGTTCTTGGGGTTGCAGACATTGAAGATTTAAACTATCTGCCAACTAAAGATTTTATTCTTGGGCTGTTGTCTTTGTAGTTAAATAATAATGGATTTTGCTTGGTGTTGCCTTTGATTAGGATTCTACTAATATTCAGTGACACAATTATACTCACCTCTTTTGCTGCCTTTTATCTTCAAGCTTTCATAgtgtttgaaattttgaagagTTTTATTGCTGTTTGCCGATTCCGAAGTAGAATATTGTAATGATGATAGATATTGATATTTGTGTTTGCAATAGAGTGTTGTAGTCTAAAGGAAGTGTT

Protein

Uniprot

Uniprot term	Description
A0A0D1DZT6	Serine/arginine (SR)-type shuttling mRNA binding protein OS=Mycosarcoma maydis OX=5270 GN=RRM75 PE=2 SV=2
Q62826	Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus OX=10116 GN=Hnrnpm PE=1 SV=4
Q9D0E1	Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus OX=10090 GN=Hnrnpm PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050374	Family	RRT5/SRSF/Splicing Factor SR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan