Detailed information of ENSKFPP00000010201.1 in Condylactis gigantea

Genomic Location: chr15:1335749...1339882
NR annotation: XP_031556635.1, peptidyl-prolyl cis-trans isomerase FKBP8-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O35465Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Mus musculus OX=10090 GN=Fkbp8 PE=1 SV=2
Q3B7U9Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Rattus norvegicus OX=10116 GN=Fkbp8 PE=2 SV=1
Q14318Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Homo sapiens OX=9606 GN=FKBP8 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006897 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07719
all species →
TPR_2Tetratricopeptide repeatRepeatInterproscan
PF00254
all species →
FKBP_CFKBP-type peptidyl-prolyl cis-trans isomeraseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR050754
all species →
FamilyImmunophilin FKBP-type domain-containing proteinInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR013105
all species →
RepeatTetratricopeptide repeat 2Interproscan
IPR001179
all species →
DomainFKBP-type peptidyl-prolyl cis-trans isomerase domainInterproscan
IPR046357
all species →
Homologous_superfamilyPeptidyl-prolyl cis-trans isomerase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46512
all species →
PEPTIDYLPROLYL ISOMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005740
all species →
Cellular Componentmitochondrial envelopeInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006457
all species →
Biological Processprotein foldingInterproscan
GO:0012505
all species →
Cellular Componentendomembrane systemInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0043066
all species →
Biological Processnegative regulation of apoptotic processInterproscan
GO:0044183
all species →
Molecular Functionprotein folding chaperoneInterproscan
GO:0003755
all species →
Molecular Functionpeptidyl-prolyl cis-trans isomerase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09574FKBP8; FK506-binding protein 8EC:5.2.1.8
Chaperones and folding catalystsko03110deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP