Gene detail

Detailed information of ENSKFPP00000012444.1 in Condylactis gigantea

Genomic Location: :...
NR annotation: CAB4024652.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSKFPT00000013398

ATGTCGTTTCAGTTGCCCAGTGGGAACAGACGCAACTTAAAACGAAAGTCTACGGACACGACGAACAACATAGGAATTAGTTGCAAGAGCTCAACCAGATGGCTAAGAGGGAGACTATGCGCTTTGCACCGACGTAACCAGAGTAACGACGTTGAGCATTACTTTATCGAGCCGATAGATGTTCTACCAGATGGATATAACGAAGGGAAAGACGTGTATTTACATCGAAGCAATCTGTCAAGTTATTTACCAACTCTTGCCAGCCGGGATGAGGTGGAGTTCATCCTTGGTGACCGCAACAAACAAAAGCCCATGGCGAGGAAAGTTCGTGTCGTGCAGTACTCTTCTCGCGAATGCAAAgatcttgaagattttatgaGCAAATATATGGAACAGCTGCGATCCAGGGAACGGAACCAAGTTCTAATGGAGACTCTGCCATGCCTTGCTTTGTGGAAACTGTTTGGATCATCTACATGCCATGGTAAAGAAAGGTTTGTCTGTTATATCGAGTCCCTATTAACGCTCCTCTGTGAAGTCCTAAGCGTtggaaaacaatacaaaacgCTTGTGGAAGATATGATCTTTTCGGTCTTACAAGGCAGCATAttccaagaaaacaacaacTGCAACCTCGCGGATACAATAAGGAGTAGCGCGTCAGACGATACGAAGGCATCTTGGTTTAATGCAGTGTTCATCTTCTGTCAAGAGATTGCAAGAAACGTGCCAAAAGCAATGAGGTCATTGTTGCCTTCCATCTCTGCACTAGTTAAAGTCAAGCCGCTAGCTGATTTAGACTTTGCATTCCAGCTCCTTTCTACTGTTGTGACTGCTAGCGAATCGCGTGGGGTCAATGGTTTGGAAGTGTGGAACGAAATGCCCCTAGTACCTGGCACTAAAGAACTTGTAGGGTGTTTAGTTGAAGAAGATAATCATCTTGTCCCTGTCAAGCTGAACGAGAGCTACCATGGTACAGAAGAATACATGGATACGTACTTCAGACTCCTCCGCGCTGAAGCCTTTGCGGCAATACAACGAGGCATCAAGGATCTTAAAGGCAACAGACTTGACCCACGAGACATGAATGTGTACTTTCGTGTCATCTTAGCTGGATACGAAGTGTTTAACGGTCAATTTTCTCTAGCCTTGCAATTCAAGCCAGCGAGAGAGGTGAAGAAATGGGAAGCATCACCTCAGCTCATGTTTGGAAACCTACTTTGTATCTCACCAAGCAGAAGATTTGATGACGTTATCTGGGCTACCGTGTCGAACAGAGATACCAAGCTGCTAACCTCATCAAGGATTATCACGGTGGAACTCATTGAGTGCAACGGTAAGTCTGTAACCGAGATCATGACCTCATTGCGAGAGAATAACGCCTTAACCGTCATGGTAGAGTCACCGACATATTATCTTTCTTTGAGTCCCGTCCTACGTACTTTGCAAGGCTTTGATATGGAGAAGTTTGCACTGCAGGAAGAAATTGTCTACACAAAAAGTCAAGAATCCTTTCCAGATTATATCGCTGATTCTGAAAGCCTGGACATTACAGGGATAAGCAAAGCAGGACAATCTCTCCCTCAAAGAAGTAAGATGGGAATCGACGATTTTTTTCGTACGTTCTCGAACTCATCTAGCACAACGTTAGAAGATAGCCAATTAAATGCTTTGATGTACGCATTAAAACACAGGCTAGCAGTCATCCAAGGACCCCCTGGATGCGGGAAGACCTACCTTGGTGTGAAAATAGTCCAACTGCTCCTCTCGCTGTCCCCTTCCTTAACCGAACCAATACTTCTCTTGACTTACAAGAACCACGCTCTAGACGAGTTTCTGAAAGCGATGTTTGACTTCTGCCCAAAACATGAGATTGTCCGGATCGGCAGCAGATCGAAAGAAACTCAACTAGAGGAATGCAACTTGAATAATGTCATGAAACAGCACAGATCTGCAAAAGCAGTACACGTTGAAATTGAAGACACAAAGCAGCAAATACAGCAACTCTCGGACAATATAGCATCTAAAAGTGCCGATATTGACAGCAGTTATCAATTAACGCTGAAGACACTTATCGATGAGCTATCCGACGAGCAGCTTGAATCTCTGCTTCTAGATGCTGCTTGGAATAAATACGGTCTTGTGTAC

Transcript

ENSKFPT00000013398

ACAGTGCTGGTTCTCTTAAAGGAAACTCACGAGAGCATTCTACCAAGTTATCCTGTCTGGAATAGAAATTACGGAAATGTCGTTTCAGTTGCCCAGTGGGAACAGACGCAACTTAAAACGAAAGTCTACGGACACGACGAACAACATAGGAATTAGTTGCAAGAGCTCAACCAGATGGCTAAGAGGGAGACTATGCGCTTTGCACCGACGTAACCAGAGTAACGACGTTGAGCATTACTTTATCGAGCCGATAGATGTTCTACCAGATGGATATAACGAAGGGAAAGACGTGTATTTACATCGAAGCAATCTGTCAAGTTATTTACCAACTCTTGCCAGCCGGGATGAGGTGGAGTTCATCCTTGGTGACCGCAACAAACAAAAGCCCATGGCGAGGAAAGTTCGTGTCGTGCAGTACTCTTCTCGCGAATGCAAAgatcttgaagattttatgaGCAAATATATGGAACAGCTGCGATCCAGGGAACGGAACCAAGTTCTAATGGAGACTCTGCCATGCCTTGCTTTGTGGAAACTGTTTGGATCATCTACATGCCATGGTAAAGAAAGGTTTGTCTGTTATATCGAGTCCCTATTAACGCTCCTCTGTGAAGTCCTAAGCGTtggaaaacaatacaaaacgCTTGTGGAAGATATGATCTTTTCGGTCTTACAAGGCAGCATAttccaagaaaacaacaacTGCAACCTCGCGGATACAATAAGGAGTAGCGCGTCAGACGATACGAAGGCATCTTGGTTTAATGCAGTGTTCATCTTCTGTCAAGAGATTGCAAGAAACGTGCCAAAAGCAATGAGGTCATTGTTGCCTTCCATCTCTGCACTAGTTAAAGTCAAGCCGCTAGCTGATTTAGACTTTGCATTCCAGCTCCTTTCTACTGTTGTGACTGCTAGCGAATCGCGTGGGGTCAATGGTTTGGAAGTGTGGAACGAAATGCCCCTAGTACCTGGCACTAAAGAACTTGTAGGGTGTTTAGTTGAAGAAGATAATCATCTTGTCCCTGTCAAGCTGAACGAGAGCTACCATGGTACAGAAGAATACATGGATACGTACTTCAGACTCCTCCGCGCTGAAGCCTTTGCGGCAATACAACGAGGCATCAAGGATCTTAAAGGCAACAGACTTGACCCACGAGACATGAATGTGTACTTTCGTGTCATCTTAGCTGGATACGAAGTGTTTAACGGTCAATTTTCTCTAGCCTTGCAATTCAAGCCAGCGAGAGAGGTGAAGAAATGGGAAGCATCACCTCAGCTCATGTTTGGAAACCTACTTTGTATCTCACCAAGCAGAAGATTTGATGACGTTATCTGGGCTACCGTGTCGAACAGAGATACCAAGCTGCTAACCTCATCAAGGATTATCACGGTGGAACTCATTGAGTGCAACGGTAAGTCTGTAACCGAGATCATGACCTCATTGCGAGAGAATAACGCCTTAACCGTCATGGTAGAGTCACCGACATATTATCTTTCTTTGAGTCCCGTCCTACGTACTTTGCAAGGCTTTGATATGGAGAAGTTTGCACTGCAGGAAGAAATTGTCTACACAAAAAGTCAAGAATCCTTTCCAGATTATATCGCTGATTCTGAAAGCCTGGACATTACAGGGATAAGCAAAGCAGGACAATCTCTCCCTCAAAGAAGTAAGATGGGAATCGACGATTTTTTTCGTACGTTCTCGAACTCATCTAGCACAACGTTAGAAGATAGCCAATTAAATGCTTTGATGTACGCATTAAAACACAGGCTAGCAGTCATCCAAGGACCCCCTGGATGCGGGAAGACCTACCTTGGTGTGAAAATAGTCCAACTGCTCCTCTCGCTGTCCCCTTCCTTAACCGAACCAATACTTCTCTTGACTTACAAGAACCACGCTCTAGACGAGTTTCTGAAAGCGATGTTTGACTTCTGCCCAAAACATGAGATTGTCCGGATCGGCAGCAGATCGAAAGAAACTCAACTAGAGGAATGCAACTTGAATAATGTCATGAAACAGCACAGATCTGCAAAAGCAGTACACGTTGAAATTGAAGACACAAAGCAGCAAATACAGCAACTCTCGGACAATATAGCATCTAAAAGTGCCGATATTGACAGCAGTTATCAATTAACGCTGAAGACACTTATCGATGAGCTATCCGACGAGCAGCTTGAATCTCTGCTTCTAGATGCTGCTTGGAATAAATACGGTCTTGTGTACA

Protein

Uniprot

Uniprot term	Description
Q8R151	NFX1-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3
Q9P2E3	NFX1-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=1 SV=2
P34243	DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCS1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031048	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08741	MSH5; DNA mismatch repair protein MSH5	-	Chromosome and associated proteins	ko03036	deepkoala