Genomic Location: chr18:2076005...2080944
NR annotation: XP_020913699.1, UDP-glucose 6-dehydrogenase [Exaiptasia diaphana]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000014563 |
| Transcript |
| ENSKFPT00000014563 |
| Protein |
| ENSKFPP00000013482.1 |
| UniProt accession | Description |
|---|---|
| O60701 | UDP-glucose 6-dehydrogenase OS=Homo sapiens OX=9606 GN=UGDH PE=1 SV=1 |
| O70475 | UDP-glucose 6-dehydrogenase OS=Mus musculus OX=10090 GN=Ugdh PE=1 SV=1 |
| P12378 | UDP-glucose 6-dehydrogenase OS=Bos taurus OX=9913 GN=UGDH PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004232 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03721 all species → | UDPG_MGDP_dh_N | UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Domain | Interproscan |
| PF00984 all species → | UDPG_MGDP_dh | UDP-glucose/GDP-mannose dehydrogenase family, central domain | Domain | Interproscan |
| PF03720 all species → | UDPG_MGDP_dh_C | UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028356 all species → | Family | UDP-glucose 6-dehydrogenase, eukaryotic type | Interproscan |
| IPR001732 all species → | Domain | UDP-glucose/GDP-mannose dehydrogenase, N-terminal | Interproscan |
| IPR017476 all species → | Family | UDP-glucose/GDP-mannose dehydrogenase | Interproscan |
| IPR014027 all species → | Domain | UDP-glucose/GDP-mannose dehydrogenase, C-terminal | Interproscan |
| IPR036220 all species → | Homologous_superfamily | UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| IPR014026 all species → | Domain | UDP-glucose/GDP-mannose dehydrogenase, dimerisation | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11374 all species → | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003979 all species → | Molecular Function | UDP-glucose 6-dehydrogenase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006024 all species → | Biological Process | glycosaminoglycan biosynthetic process | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00012 | UGDH, ugd; UDPglucose 6-dehydrogenase | EC:1.1.1.22 | O-Antigen nucleotide sugar biosynthesis | ko00541 | deepkoala |
Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
