Gene detail

Detailed information of ENSKFPP00000015521.1 in Condylactis gigantea

Genomic Location: not available for this species
NR annotation: XP_031564381.1, BRCA1-associated RING domain protein 1-like [Actinia tenebrosa]
Species abbreviation CGIGA · all data for this species · gene families

Sequence

CDS

ENSKFPT00000016772

ATGATTAAATGGAAAATAACGAAGTTAGCTTTGTCGAACTTGGAAAGACTACTGACTTGTTCGCTATGCAAATGTTTGGTCCAGGATCCGTGTACTCTGGAAGGCTGTGATCATCATTTCTGCAGAAATTGTGTTGAAAAGCTTGTTGGAGTTGAAAATAAATGCCCAGAATGTGGAGCTTTTGCCTGGTCTAAAGACTTAAAGGTCAACAGACGGTTAGCTGACATTCTATCATTGTGCAAATCAATAAGGAGTTCTATTGGAAATGACGACTATGCTGCTGAAACTGCTACACCAATTCAAGAAACTTATGAAGCTGATGTCCTGCTGAGACCAATTTCTACATCCACTGAAGATGATAAAATAGCTGAAAGTAATGAAATTAGACAAAGTGCacaagatggtgatgatattcTATTAAAACATAGCTGGAATGCTAGAAAAAGAAGACAGGAGCTTGAAAATAATActgacaacaacaataactACAAAAGAGAAGAGTTTGATGTACATTCAGAGGCTTGTTGTTCACAAGAATCTGAAACAGAAGATGTAAACAGTTCAATAGAATTGTTTAgttcaaataattcattctGCAATGAAAATGATCTTACCCAGTCAGAAACACCCTCTTCAAATGCACATGGTGAAGAGTCGGACATTATAACATGCACAGATGACAAAGACATTAATGCATCTATTGGTAATCATGAAAATAATCCtgaaatgtcaaaaatatgtGATTCAAGACCTAAACCTGACACCCATGTTAACACTGATATCCAAGAGATCGTACAggtgaaagggaaaaaaagaaaaatgtctgATACGAGTGATTCAGAAATTGATGATATAGGAACCACTTCAACTTTACAAGAGAAAGTATTGATGACAGAGAGAAGCACACCAGACACAGAGAAAACAATTCATTCACAAAGAGACCATGAAATGGAGTCTTCatctaaaaagaaaagaagtaaaCTAGTTTCATCTCACAAAAACACTGGGAAGACAAATCAATTGACTCCACAGAGGGATAGCATCAGGAAAAAGCTCATCACTAGCCCAGCAAGTGTTAAATCTATAATGGAATTATCCCCTGCACAACTGACAAAAAGGAATAAGCGTGGTGAAGGACTGCTTCATGTTGCTGCAATCAAGGGTAATGATGAGGATGCAAGATGCTTGCTAAAGAAAGGAGCAAATCCCAATGCAAGAGATAATGCTGGCTGGTCTCCTCTTCATGAAGCATGCAATCATGGATATGTTAGCATTGCAGAACTGCTGTTGGATAATGGAGCAATTGTCAATCTACCAGGAGGACCAGAGCATGAAACTCCATTGCATGATGCCGTTGCTAATGGTAGATTGCAAGTCGCAAGCCTGCTGATGAAGAGAGGTGCTTCCCTGCATGCAAGGAACAATCAAGGACTAACTCCTATTGATTATGCATTTACTGACCCTATGAAAAGGCTACTGGAAGAAGAACCTTCTGCACAGTGTCAGACATGGACAAATGACAAGGAAAACATTCTTCTGCAAACAAACCTGCCTCAGGAACATCACACCGCAAAAGTTCTTTTATACACTGGATTAAAAACAGAACAAAAGGAAAAACTGGAATTATGTGCAGCTATTCTTGGTGCTAAAGTTGTGAATGAATTCTCAGTTGATGTGACTCACATCATAACAAGCACCAACAATTCAAGCCTTTGTCGTCGCACCATGAAGTATCTTAGTGGTATCCTGTGCGGCAAATGGATTGTTTCATTTGGGTGGATTACAAAATGTCTGTCAGCCAGTAAATGGGTAGATGAAAATCCTTTTGAAGTGAAGGGGACAAGTAATGCAAAGAGTGGGATACCACATCATGCAAGACTGAATCACCTACAACAGCTCCCTGGTTTGTTTGATGGCtgcaaatttttcttttctggaaCATTTGATCCCAAGACACCTATAAAAGAGGATCTTATAAACCTAGTAAATTATGGAGGAGGCAAAGTACTAACCCGTGAACCCAAACAAGAGATTGACTATTCACCTTTTATTGTTCAATCCAAATGTCACAAGGATACGATACCTGCATCTGTGATATCCACAGTTGCGTATCATGCGCAACCAGACTCTACACAATATAGATGCACAACATACATTATTTATGATCCACTGTCACAAAATAAGCAATCGGTAAGGAATGTTAGTGGGCCATCTGTTGCACCTGTAGGTTGGCTGTTGGACTGTATCTCTAACTTTGAGATTTTAGATATGCCTTCTGTAGAAGATCGATGCAAAATATGA

Transcript

ENSKFPT00000016772

GATAAGGAGAGGGTTGATAGAGGGTAGATTGGTAATGAGGAAACAATTCTGGATTTGCGCTTGCGCAGTTTAGCGGTATTTCAAATTTCTCTGGCGGGAAGGAAAGTATGGCGGTAGCTTGGAGTTGTCTCATCTTTATGTCTGATTCATGGTGTTTTACTCTTATAATTCTGAAAAGTTAAACCTAATTCTGTTTGCCAGTGTCTTAGCCATACTATGAATGTTTGACAATTCGAATCTTTGGAATATTTAACATGATTAAATGGAAAATAACGAAGTTAGCTTTGTCGAACTTGGAAAGACTACTGACTTGTTCGCTATGCAAATGTTTGGTCCAGGATCCGTGTACTCTGGAAGGCTGTGATCATCATTTCTGCAGAAATTGTGTTGAAAAGCTTGTTGGAGTTGAAAATAAATGCCCAGAATGTGGAGCTTTTGCCTGGTCTAAAGACTTAAAGGTCAACAGACGGTTAGCTGACATTCTATCATTGTGCAAATCAATAAGGAGTTCTATTGGAAATGACGACTATGCTGCTGAAACTGCTACACCAATTCAAGAAACTTATGAAGCTGATGTCCTGCTGAGACCAATTTCTACATCCACTGAAGATGATAAAATAGCTGAAAGTAATGAAATTAGACAAAGTGCacaagatggtgatgatattcTATTAAAACATAGCTGGAATGCTAGAAAAAGAAGACAGGAGCTTGAAAATAATActgacaacaacaataactACAAAAGAGAAGAGTTTGATGTACATTCAGAGGCTTGTTGTTCACAAGAATCTGAAACAGAAGATGTAAACAGTTCAATAGAATTGTTTAgttcaaataattcattctGCAATGAAAATGATCTTACCCAGTCAGAAACACCCTCTTCAAATGCACATGGTGAAGAGTCGGACATTATAACATGCACAGATGACAAAGACATTAATGCATCTATTGGTAATCATGAAAATAATCCtgaaatgtcaaaaatatgtGATTCAAGACCTAAACCTGACACCCATGTTAACACTGATATCCAAGAGATCGTACAggtgaaagggaaaaaaagaaaaatgtctgATACGAGTGATTCAGAAATTGATGATATAGGAACCACTTCAACTTTACAAGAGAAAGTATTGATGACAGAGAGAAGCACACCAGACACAGAGAAAACAATTCATTCACAAAGAGACCATGAAATGGAGTCTTCatctaaaaagaaaagaagtaaaCTAGTTTCATCTCACAAAAACACTGGGAAGACAAATCAATTGACTCCACAGAGGGATAGCATCAGGAAAAAGCTCATCACTAGCCCAGCAAGTGTTAAATCTATAATGGAATTATCCCCTGCACAACTGACAAAAAGGAATAAGCGTGGTGAAGGACTGCTTCATGTTGCTGCAATCAAGGGTAATGATGAGGATGCAAGATGCTTGCTAAAGAAAGGAGCAAATCCCAATGCAAGAGATAATGCTGGCTGGTCTCCTCTTCATGAAGCATGCAATCATGGATATGTTAGCATTGCAGAACTGCTGTTGGATAATGGAGCAATTGTCAATCTACCAGGAGGACCAGAGCATGAAACTCCATTGCATGATGCCGTTGCTAATGGTAGATTGCAAGTCGCAAGCCTGCTGATGAAGAGAGGTGCTTCCCTGCATGCAAGGAACAATCAAGGACTAACTCCTATTGATTATGCATTTACTGACCCTATGAAAAGGCTACTGGAAGAAGAACCTTCTGCACAGTGTCAGACATGGACAAATGACAAGGAAAACATTCTTCTGCAAACAAACCTGCCTCAGGAACATCACACCGCAAAAGTTCTTTTATACACTGGATTAAAAACAGAACAAAAGGAAAAACTGGAATTATGTGCAGCTATTCTTGGTGCTAAAGTTGTGAATGAATTCTCAGTTGATGTGACTCACATCATAACAAGCACCAACAATTCAAGCCTTTGTCGTCGCACCATGAAGTATCTTAGTGGTATCCTGTGCGGCAAATGGATTGTTTCATTTGGGTGGATTACAAAATGTCTGTCAGCCAGTAAATGGGTAGATGAAAATCCTTTTGAAGTGAAGGGGACAAGTAATGCAAAGAGTGGGATACCACATCATGCAAGACTGAATCACCTACAACAGCTCCCTGGTTTGTTTGATGGCtgcaaatttttcttttctggaaCATTTGATCCCAAGACACCTATAAAAGAGGATCTTATAAACCTAGTAAATTATGGAGGAGGCAAAGTACTAACCCGTGAACCCAAACAAGAGATTGACTATTCACCTTTTATTGTTCAATCCAAATGTCACAAGGATACGATACCTGCATCTGTGATATCCACAGTTGCGTATCATGCGCAACCAGACTCTACACAATATAGATGCACAACATACATTATTTATGATCCACTGTCACAAAATAAGCAATCGGTAAGGAATGTTAGTGGGCCATCTGTTGCACCTGTAGGTTGGCTGTTGGACTGTATCTCTAACTTTGAGATTTTAGATATGCCTTCTGTAGAAGATCGATGCAAAATATGACTGTAGAGACAGTAGATATTCTCTTTCCTAGAATCTACATTCTAAAGAAAGCATTTTAAGTTGAACTGCCATGAAATACCGAGACAAACTGCTCGTAATTTCCCACAACTAAACCCAAGTTCAAAACTTGTCGTTTGCACATGTCTTAATGAGACTCATTGTCAGCaatgatgcattgcggtcttggtatgcagtattatcatcaatatacagggccaaataataaactgccctcaacaaaactagcaaggaggcgggctgcaaatacatttgcggccctactcatgattgactgagaaattatcgtactttcttttgttatatgttgaaaaattgtactatttggcctagtatatattgatgataatattaatcacatgacttttgtcaggcatattgtttatttgtggcccttgtagcatcatttgcatcCTTGCTATGCTCaggcgcaaatgatgctactcgggccacaaataaacaatatgccctccaaaagtcatgttattgtccaattcAGCAAATCggaggacaaccttttttgaaataggtgtatatagtgATTATGTTACAGTGTAATTCTGCATGCTGTATGAACCACACAGAACTGTAAAAAAAAGGTAACAAAAAAGATATGTTTACTAAAGCTCAGACTAGATGTTTTGTGTTGTTTAACAATTAGTAAGGCAAATGTAATGACCTTAGATATTGagtttttcagagaaactaataaaagtttttttatgtaaaactcaatcaatgcagCTGTTCCTAAAGAGCTTGTgacttaaaaagtagtttctGGGGTCTTCTTCAACTATCCACTGGACCCTATGGGCAATTACATTTGATGTGGCAAAAGTTCACTGTCAGAACTGGTTAACACGAGACTCAAACTTGTTAATGTTTATTGGGTTACAAAAATAGCAATGAACAAAATTATAATGACATTACAAATTACTTACAATTAAAACAGGAAATTGTACAAAAGGACAgttgtta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3P9	SMC5-SMC6 complex localization factor protein 1 OS=Mus musculus OX=10090 GN=Slf1 PE=1 SV=3
A6QR20	SMC5-SMC6 complex localization factor protein 1 OS=Bos taurus OX=9913 GN=SLF1 PE=2 SV=2
Q9BQI6	SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens OX=9606 GN=SLF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF14835 all species →	zf-RING_6	zf-RING of BARD1-type protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039503 all species →	Domain	BARD1, Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0085020 all species →	Biological Process	protein K6-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10683	BARD1; BRCA1-associated RING domain protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.