Detailed information of ENSKFPP00000017645.1 in Condylactis gigantea

Genomic Location: chr3:8271974...8290420
NR annotation: XP_031555970.1, uncharacterized protein LOC116292758 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IVV2Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens OX=9606 GN=LOXHD1 PE=2 SV=4
C8YR32Lipoxygenase homology domain-containing protein 1 OS=Mus musculus OX=10090 GN=Loxhd1 PE=2 SV=1
Q02445Tissue factor pathway inhibitor OS=Rattus norvegicus OX=10116 GN=Tfpi PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000017 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF13385
all species →
Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00014
all species →
Kunitz_BPTIKunitz/Bovine pancreatic trypsin inhibitor domainDomainInterproscan
PF12661
all species →
hEGFHuman growth factor-like EGFDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR002223
all species →
DomainPancreatic trypsin inhibitor Kunitz domainInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR036880
all species →
Homologous_superfamilyPancreatic trypsin inhibitor Kunitz domain superfamilyInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR036508
all species →
Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR013032
all species →
Conserved_siteEGF-like, conserved siteInterproscan
IPR050969
all species →
FamilyDevelopmental Signaling ModulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14949
all species →
EGF-LIKE-DOMAIN, MULTIPLE 7, 8Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004867
all species →
Molecular Functionserine-type endopeptidase inhibitor activityInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0008061
all species →
Molecular Functionchitin bindingInterproscan
GO:0005102
all species →
Molecular Functionsignaling receptor bindingInterproscan
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan
GO:0009986
all species →
Cellular Componentcell surfaceInterproscan
GO:0048856
all species →
Biological Processanatomical structure developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSKFPP00000017645.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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