Gene detail

Detailed information of ENSKFPP00000017818.1 in Condylactis gigantea

Genomic Location: chr2:12893300...12900738
NR annotation: XP_031571889.1, glycerol-3-phosphate dehydrogenase 1-like protein isoform X1 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSKFPT00000019208

ggaagcccacagggaagaagaaagcaaagatGGCGGCGCCAGGTGCAGTGGAAATGTCAGTCAGTTAGCTGCTGCACTATGTAAATGAAGTCTTCTTCCCTCCAAATctaacaaacaataaatagagatgatgatgaggggACAATTGAATGGGTTATATGGAGTTCTGCGGAGAATATCTGCAGGAGATCCAAGATGGTTTCACGGTTCAGCAAAGAAGGTTGCCCTCGTTGGATCTGGCAACTGGGGTACAACAATAGCAAGGATAATCGGTAGCAACGTGAAGAGAAAACCACACATGTTCCAAGAAAATGTTCAGATGTATGTGTATGATTCTGTGCATGACGATGGAAGACAGTTAACACAAATCATCAACACAGAACATGTGAATGTCAAGAACTTGCCGGGTTATGTCATCCCGGATAATGTGATTGCAAACCCAGATTTGGTGGATTCAGTCAAAGATGCTGACATTTTAGTTTTTAATTTACCACCCATGTTTTTAAAGAAGACTTGTTTCAAGTTACAAGGAAATATCAAACCAGGTGTAATGGCCATCTCAATGATCAAGGGTCTTGACCACAGTAAAAAGGGATTTCACCTGATTTCACAGCAAATCAGAGACATACTAGACATTGCAGACATTAGTGTCATGATGGGGGCAAACATTGCTGAAGAAGTTGCCAAGGAAATGTTTTCTGAGTCAACAATTGGCTCTAAATCTATGGAACATGGTCACATATTTAAAGAACTTCTCAGCATGCCCTTCTTTAAAGTGAATGTTGTGTCTGATGTGGAGAGTGTGGAGTTCTGTGGCGCAATTAAGAATGTGGTTGCTATCGGAGCAGGGATCATTGATGGCCTTGGATATGGTGACAATACCAAAGCAGCCATCATAAGGATAGGTTTGGAAGAGGCCTATGAGTTTTGCTCTGCTTTCCTGCCGGCTTCTTGTAGGTTGTCGACATTTTTTGAATCCTGTGGTATTGCTGACTTCATTGTGACATGTTATGGTGGCAAACATCGGCTTGCTGGAGAGGCTTTTGTTAAGACCGGCAAGCCATTTAATGAGCTGGAATCCATCGTACCTGAGCTTCGGTTCAGGAAGCTTCCTGGTCCAGAAACTTTAGAAGCTGTGTTTGAAGTGGTGCAAGagaaaaaactagaaaaaaaATTTCCATTGGTGACAGTGTTATACAATATCTGTTTCAAAGGAGGTTCTCCAAATGATATTATTGAAGCATTACAAAGCCACGATGAGTTCCCTGCAAACTtgtaataaataaaaccagttgtggtctagcttgtgGTCATAcgtgggtggcatgggtggcgcagcagtgagagcgctcacctctcacctctatggtcccaggttcaagtcccagcttgggcaggatcatatgtgagttgagtttgtttgatgtgttgttctctcctgtgccacaagggtttttctccaggttctctggttttcctccctccgtaaaaatcaacatgtgagttgagagttctgtgcatagaaaatatcatgTAGTGggagtgtgtgtgagtgaaaagtgtccccaattagtgcgagagcactagaacgactagacactttaataaagatatatattattatttattattgttaAAATGTTACGACCCTCCCCCCTGTTTCTCCCCCCTCCGTCCCCCTGATAATTTTTGGCTAGTCCCTAAAATACCTGCATTCACCTCTATGATATCTGAGGTACTCTTCTCTTTGGAGGAGGGGAGGGCTAGCTATGTGGGTAGAAGAGAGCAGGTGAGGATACAGGGGGGTGGATTGGGCGGACATCTTCCCCCCCTTTCCGAGTCCTAACAATCGAAAACATACTTAATGTTGTTTGTTGCAGCCAAGACTTTTCCATGATCATTATCAACTTATCAAACTAATCATGCCCCTGGAGAGGAAGGATGTCTTCCTGAATATCATCTACCAGTTCTCTTTTACCTGCCTAGCTCTGAGTATCATATAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P824	Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus tropicalis OX=8364 GN=gpd1l PE=2 SV=1
Q801R8	Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus laevis OX=8355 GN=gpd1l PE=2 SV=1
Q5EA88	Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Bos taurus OX=9913 GN=GPD1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002405 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01210 all species →	NAD_Gly3P_dh_N	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	Family	Interproscan
PF07479 all species →	NAD_Gly3P_dh_C	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR006168 all species →	Family	Glycerol-3-phosphate dehydrogenase, NAD-dependent	Interproscan
IPR011128 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006109 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR017751 all species →	Family	Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11728 all species →	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan
GO:0047952 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0004367 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006116 all species →	Biological Process	NADH oxidation	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046168 all species →	Biological Process	glycerol-3-phosphate catabolic process	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0042803 all species →	Molecular Function	protein homodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00006	GPD1; glycerol-3-phosphate dehydrogenase (NAD+)	EC:1.1.1.8	MAPK signaling pathway - yeast	ko04011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →