Gene detail

Detailed information of ENSKFPP00000017877.1 in Condylactis gigantea

Genomic Location: chr19:3611111...3620048
NR annotation: XP_031571507.1, hepatoma-derived growth factor-related protein 2-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSKFPT00000019273

GaggacgccatcttggtttttgCAAATCACTTTGCTCTAAAGAGTTTTTTATTAAACTTTTTATAAGGTTTCTCATTCTTTACTTCTTAATTCGTATCTTAGCAATGTCTTTTCAGCCCGGGGATCTCATCTGGGCAAAAATGAGAGGTTATCCTCACTGGCCCGCTAGAATTGATCTTCCAGCTCCAAATGAAAAGATTCCAGCCAAGAAGTTCCCTATTTTCTTCTATGGGACACACGAGACAGCTGTAATGCAAGCAAAGGATTTGTTTGATTATGAAAAGAACAAAGCCAAATATTCCAAACCATCAAACAGAAGATTTTTCAATGAGGCTCTGGAAGAGATAATTGAGAATCCCAAGGTCAGATATGGTCAGCGTGGGATGCCTGTGGAATCTGAATCCGAGGAGAGTTCTGGGTCTAGGTctgaggaggaagaggaggagaaaaaacaggaagaagaaaatagtACTGACCAGAAACAGGTACAAGGCAAGCGTAGAATGAGCACAGACAATAAGACACCagcaaagaagaaagcaaggatAACTGAAACAGTGGAATCAGAAAGCGAAGAGCCTATCGAATCAGATGAATCAGAAGAAAGTTCGGAATCTGAAGGAGAGGAGTATTTACCTGAATCCAaaagcaagaagaaaaaggaaacacCACAAAAATCTAAAGCTGTTAAAGGAAAAACCAAATCCCCTgccaagaagtcaaagaaaatcATTAGCAGTGATGAAAGCAGTGAAgacgaagatgatgaaaaagaTCATGAGAACTCAAGTAAAAAGGACTCCGAACCGGAAGACAGCACATCGGAGGAAGAAGACAACAAAAAGAAAAAACTAgatgagaaaaagaatgaagtCAAACCAAAGCAGGAAACTGAAGACAGCAGtgaagaaacagaagaagaaaagaagaaaaaggaagaaatggaaagaaggaaacaggaaaaactggaaaagagaaaGGAGGAGTtaaaagagaagaagagaaaagaaaagctcgAACAGAAGgcaaaacagaaagaaaaggaaaagcaggaaaaagaaaaggaaaaagaacggaagttaaaagagaaggaaagagagaaagaaaaagaaaaagaaaagaccttaaaggagaaggagaaggaaaaggcaagaatggaaagagaaaagcaaaaggaaaaagaacgcaaggagaaagaaaaacagaaagaaagagaaaaaattgaatgGCAAAAACAGAAGGAACGCTTAAAAAatccaactatttatgacactttagAAATCTGTAACCATGATCTTAGAGTATCATTAACAGTGGAAGCTCCAGATATACCAAAATGTTTAACGACGTTAAACAAGATCAGTGAGATGCCAATTAGCCCAGATGTCATAAAGAAATCCCCTGCTATTGTTCAAACAATTAAAAGGATACGTACATACAAGCAAAACAATAAAGTCAGGGAAAGAGCTTCAGAACTTTACACTAAATTAAAATCTCTCTTCATAGTATCAGGCAATGATATCCCTGGTACTGCTACAGAAAAAATTCCAACTCAAACCCCTTTCACTCCAGCTGGCCAGGAAAACATCGAAAAATTTTCGAATCCACCAGTTAAAACAGAAGAGAATGAAGATGGAAAGTCAGATGATAGACCTGTGGAGGAATCTACAGAACAACCAGCTCCAGTGGAGGCCACACCTGTAAATGATAAGGAGAATGTATTAGTTGATCACAAAACACAAAATGGTTCACATAGCATAGAAAACAGCATTCCAAGTCACGCACAAGAACTCGGCGCCACAGCCATAGAAAATGCCCAAAATTATAACGAAATGACGGTAAAACAAGAAACACCAGGCAATGACGACCAGATAGAGAACTTCACACCGTGTGATATGGAAATTTCTAGTCCAATCTAAATCTCTTTAATACCATAATCGACATCTTGGGGGAAcgagggactgttcattttttaccaggggggtgggggtggggctAGTGGTTTTGAAAACGTTTGGTATAAGATTTGCCTGCATACCCTCCCATAGTAAGctatatttttctatctttaatCTTCCAATTTTTTggtgaccctcccctcccccatgtAAAAATTATCGCATCCTTCCCCCCCCATAGCCATTTTTCCTGGTAAAAATGAACGGTGCCTAATATCAATGAAAATAACAAGTATATCACCCCTTtagtcaaaaataatttatatttgaaCTCGCAGAGTTAATGTTACCGTAACATAAAATTGTGTCGAAATATCAGCCTCTGTTGACTACAACATGGTAGAGTCATCCCTTCACAGAACAGTGGCTGTTGTATAAATTCTCTTTGCTAAGCTCGACAATATCAATAGCAATGTACAGTATTCAAAAAAGAAGGATAATAAAACTTTTCAACTCGAGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99JF8	PC4 and SFRS1-interacting protein OS=Mus musculus OX=10090 GN=Psip1 PE=1 SV=1
Q812D1	PC4 and SFRS1-interacting protein OS=Rattus norvegicus OX=10116 GN=Psip1 PE=1 SV=1
Q8MJG1	PC4 and SFRS1-interacting protein OS=Bos taurus OX=9913 GN=PSIP1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003248 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11467 all species →	LEDGF	Lens epithelium-derived growth factor (LEDGF)	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036218 all species →	Homologous_superfamily	HIV integrase-binding domain superfamily	Interproscan
IPR021567 all species →	Domain	Lens epithelium-derived growth factor, integrase-binding domain	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12550 all species →	HEPATOMA-DERIVED GROWTH FACTOR-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSKFPP00000017877.1 in Condylactis gigantea.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25065	HDGFL2; hepatoma-derived growth factor-related protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.