Gene detail

Detailed information of ENSKFPP00000019063.1 in Condylactis gigantea

Genomic Location: chr3:18372929...18381840
NR annotation: XP_031556360.1, transcription initiation factor TFIID subunit 4-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSKFPT00000020604

ATGGCGTCGTCCTTTATCGATGACCTTCTCGACAAAAAAATCGACGAAAATGAAGTAAGTGCGATGAAAGGATCGCTAGAAAGTCAACTAGCGTCATCGAAAGTTACTAATTCGACTCCAAATGAAGTAAAGCCAGTGTTTTCTACGGCTAAGTCCACTACTTCCCAAGCTAATGTTACAAGTCAACCGCCGAAGCAAAGCAGCCCAATCTTGAGCCAAACGGCTAACATCCGATCAGGGATCCCGGCGCAGAGAATTCCTGTTTCGACAACAGTTATACACATAGCGCCTAGACCGACTCCTAGTACAGCCGTTCCGTTAGCGCCGAGGCCAAATACGATGACCGTACTAGCTCCTGGAACCGGTGGAAGATATGTTATAAACGCGGCGGACTTGTTGAACAGGAATGTTAACGTGATCAATGCTTCTCGTCTTCTTGCTCCACGTATGGTGACCGGAGTAGCAGTGCCCGGTCAAGGGCAGACGATCGCTCCTCGTATCATACAGCAAATCCACCCGACACTTGCTGGAGTACCTATAGCACAAACCAGGGCACAGGCGCCCGGAGTCCAGATTTCTACAGACAGTAAAACTGGAAGGATTTCACTCAGTCAAGCACCCATTCATTCAGCTGTAGTAACAGCGTCCAGTACTGGCGTGACATTCTCTACTGTACCAAGACCTAGTCTTCAAGTCCAACCAGGCGATAACTTAAACTCTATTCCAGGAAATCCTGCAATCCGAATGCCCACTTCTGTACAACTTGTTGGAAACCAACAACAAGGCTCCTCTCCTATAAAAAATTCCAGTCAAAGCATAGCAGGCAGTCCCTCAAATCAATCCATCACTACCATAAGCTATCAAAATAGCACTAACACAAACACTGTAACTACAACAACTAAAAGCATTCCCATAACCACCACTCCTATTGGTGCGACCCAAGTTCCCATTGCGCAGACACAGGCAAAAGCCATTAATGCCCATTTGGAGGCAGTAAAGGAACAAGCTGCAAAactcaagaatttttttaacaatttgaTAAGGCTTGCTTCTGAAAAGTCCCCAGAAGTTGGGCCAGCTGTAAAGGACTTGATTCAAAAAGTTATGGAAGGCAAACTGACAGAAGATGAATTTGCTTCAAAGCTTCTCACAACACTCAGCTCTGGACCTCAACCAAATCTTGTGGGCTTTCTCAAGaaAGCATTACCAATGTTACGAGCACAAGCTGGGGCACAGATTCTACAAGTTGCCCCTCAACAACAGTCATCACAGCCACAGCCGCAACCAATACAAATAGCAAGCTCACCTGCACAGAAGGTACTTTATCAAACCCAGTCACCTCAAACACAACAGACCGTAGCATCTACCCAACAAAGAGTAACCACACCTGCTAAAACACAGGCACAGCAGCAATACAGAGTGCAACTAACACCTGAACAGCAGCTAATGCTGATGCAGAAGCAATCAGTAGTAACTTTAACACCAGCACAGCAACAGGTATTACAGCGACAGCAGCAGATCAACTCAAACCGGGTCCTCCTAGCAGCATCAAGTGCGGGTGCAGCGTCTGGAACACAAGTACCAGCACGTAATATAGTCATGCTACAGGCAGCACGGCAAGGAAGTTCAGGGATAAAGACAGTTGTTGCACAGTCCAAACCCCATTCAGCTGCTTCCCAGGCAGCTGATAAGTCCAAGCATAAGCCAACGCATGCTGGTATTAGCAGtagtggtgatgatgatataaatGATGTCACTTCTATGGCTGGTGTTAATCTCATGGAAGAAAGTCAGAGAATCCTTGCTATAAACTCAGAGCTGCTTAGCTCTCAAACCAGAAGTTGTCGAGATGAGCTGTTTCTGTACTCAGATCCACTGCAGAAGAAATTAGAATCACTAGTCAGGAAACAGGGTATAGCAGGTCTCCCTCAGGATGTCTGTGGATTGATCTCACATGCAACTCAAGAAAGACTGcgaaatattttggaaaaactgtcAGTAATAAGCTTGAATCGACCTGATAGTTACAGGGATGACCCAAGATATGAGACAATGTCAGAGACAAAATTGCAGTTACGAGTGTTTGAACACATAGACGAGGTGGAAAGGAGAAAGAGAGAACTACGAGAACGAGAAGTACTGATGCGAGCAGCAAAGAGTCGATCGCGACAAGAAGACCCCGAACAAGCTCGACTAAAAGAAAAGGCAAAACAGCTTCaacaagaggaagaagaaatcaTTCGTAAACGAGAAGCCAACAACACGGCCCTGGCGGCGATTGGACCGcgtaaaaagagaaaactggATGAAGCATTAGAAGGGGTTAACGCCAACCAGGGTTCGTCATCGCCAAGCGCAACGTTCAATTCGCCTCGCAGTGGACGACCACAGAGAACGCGGCGCATTACATTAAGAGATCTTGTCTTTGTACTGGAACAAGAAAGCGAGTCTTCCAAATCGACCTTACTCTATAAGACACTCCTAAAATAA

Transcript

ENSKFPT00000020604

ATTTCCGTTTATCTACTCCCACTCTGCTCCCACTTGCTCCCACTTGCTCCCACTTGCTCCCATACCAAACTTCAGCGTCCTTTTGAGCCTTCGTGTTAATGTACAGCAGTAGTAGGGTATAGTATTATGCGTAAGCGCAGCGGCCATCCCATAATGCTAGTAGTCCCTTTTAAACTTGTGCATCAATAGAATGGTGGTCAAATGGCGTCGTCCTTTATCGATGACCTTCTCGACAAAAAAATCGACGAAAATGAAGTAAGTGCGATGAAAGGATCGCTAGAAAGTCAACTAGCGTCATCGAAAGTTACTAATTCGACTCCAAATGAAGTAAAGCCAGTGTTTTCTACGGCTAAGTCCACTACTTCCCAAGCTAATGTTACAAGTCAACCGCCGAAGCAAAGCAGCCCAATCTTGAGCCAAACGGCTAACATCCGATCAGGGATCCCGGCGCAGAGAATTCCTGTTTCGACAACAGTTATACACATAGCGCCTAGACCGACTCCTAGTACAGCCGTTCCGTTAGCGCCGAGGCCAAATACGATGACCGTACTAGCTCCTGGAACCGGTGGAAGATATGTTATAAACGCGGCGGACTTGTTGAACAGGAATGTTAACGTGATCAATGCTTCTCGTCTTCTTGCTCCACGTATGGTGACCGGAGTAGCAGTGCCCGGTCAAGGGCAGACGATCGCTCCTCGTATCATACAGCAAATCCACCCGACACTTGCTGGAGTACCTATAGCACAAACCAGGGCACAGGCGCCCGGAGTCCAGATTTCTACAGACAGTAAAACTGGAAGGATTTCACTCAGTCAAGCACCCATTCATTCAGCTGTAGTAACAGCGTCCAGTACTGGCGTGACATTCTCTACTGTACCAAGACCTAGTCTTCAAGTCCAACCAGGCGATAACTTAAACTCTATTCCAGGAAATCCTGCAATCCGAATGCCCACTTCTGTACAACTTGTTGGAAACCAACAACAAGGCTCCTCTCCTATAAAAAATTCCAGTCAAAGCATAGCAGGCAGTCCCTCAAATCAATCCATCACTACCATAAGCTATCAAAATAGCACTAACACAAACACTGTAACTACAACAACTAAAAGCATTCCCATAACCACCACTCCTATTGGTGCGACCCAAGTTCCCATTGCGCAGACACAGGCAAAAGCCATTAATGCCCATTTGGAGGCAGTAAAGGAACAAGCTGCAAAactcaagaatttttttaacaatttgaTAAGGCTTGCTTCTGAAAAGTCCCCAGAAGTTGGGCCAGCTGTAAAGGACTTGATTCAAAAAGTTATGGAAGGCAAACTGACAGAAGATGAATTTGCTTCAAAGCTTCTCACAACACTCAGCTCTGGACCTCAACCAAATCTTGTGGGCTTTCTCAAGaaAGCATTACCAATGTTACGAGCACAAGCTGGGGCACAGATTCTACAAGTTGCCCCTCAACAACAGTCATCACAGCCACAGCCGCAACCAATACAAATAGCAAGCTCACCTGCACAGAAGGTACTTTATCAAACCCAGTCACCTCAAACACAACAGACCGTAGCATCTACCCAACAAAGAGTAACCACACCTGCTAAAACACAGGCACAGCAGCAATACAGAGTGCAACTAACACCTGAACAGCAGCTAATGCTGATGCAGAAGCAATCAGTAGTAACTTTAACACCAGCACAGCAACAGGTATTACAGCGACAGCAGCAGATCAACTCAAACCGGGTCCTCCTAGCAGCATCAAGTGCGGGTGCAGCGTCTGGAACACAAGTACCAGCACGTAATATAGTCATGCTACAGGCAGCACGGCAAGGAAGTTCAGGGATAAAGACAGTTGTTGCACAGTCCAAACCCCATTCAGCTGCTTCCCAGGCAGCTGATAAGTCCAAGCATAAGCCAACGCATGCTGGTATTAGCAGtagtggtgatgatgatataaatGATGTCACTTCTATGGCTGGTGTTAATCTCATGGAAGAAAGTCAGAGAATCCTTGCTATAAACTCAGAGCTGCTTAGCTCTCAAACCAGAAGTTGTCGAGATGAGCTGTTTCTGTACTCAGATCCACTGCAGAAGAAATTAGAATCACTAGTCAGGAAACAGGGTATAGCAGGTCTCCCTCAGGATGTCTGTGGATTGATCTCACATGCAACTCAAGAAAGACTGcgaaatattttggaaaaactgtcAGTAATAAGCTTGAATCGACCTGATAGTTACAGGGATGACCCAAGATATGAGACAATGTCAGAGACAAAATTGCAGTTACGAGTGTTTGAACACATAGACGAGGTGGAAAGGAGAAAGAGAGAACTACGAGAACGAGAAGTACTGATGCGAGCAGCAAAGAGTCGATCGCGACAAGAAGACCCCGAACAAGCTCGACTAAAAGAAAAGGCAAAACAGCTTCaacaagaggaagaagaaatcaTTCGTAAACGAGAAGCCAACAACACGGCCCTGGCGGCGATTGGACCGcgtaaaaagagaaaactggATGAAGCATTAGAAGGGGTTAACGCCAACCAGGGTTCGTCATCGCCAAGCGCAACGTTCAATTCGCCTCGCAGTGGACGACCACAGAGAACGCGGCGCATTACATTAAGAGATCTTGTCTTTGTACTGGAACAAGAAAGCGAGTCTTCCAAATCGACCTTACTCTATAAGACACTCCTAAAATAAGCGACGACGCGTGCTTTCGGTAAACGTCTCCATCCCACATGGCCTAGACACCATGGGTGATATAAGTCCCTTGGCCATCCAGTTCAGCAAGAAAGAGCGCCAAAGATATTCGGATTACAGAGAATACTATATGGAAAGCCGAAGAGATCTTCCTATTAGACCAAATTATTTTTAAGAGACTACAGCCAGGATAAGCTCTTATATTTGATCAGCTAAACTAGGGTTTGGGGAGTGGTCATGACTCTGTGAGGACGTAAGGGGTGTTGTCTATTTCGTCTCATATTCATTTTATGTTGTGCTGGGCACTAACTAAAAAATGAATCAATCATCTCGTATTCATTGCAAGACAGTTCTGTCACCGTCGGGCTCGAGGGCGTGTGGAATATACCTTTTCACCTTGGACATAAtgtgttttcatttcagaccatgccTTTTCCCAGAGTAATTATTTTGTGTTCGATGGTTGTACttacaacttaaacaaagaatcttattctcaagaaaatgacacgtggtgtgaaaTGGGAAATTTATACGCCCAAGGTAAGAGGTCTGTTAACGTTTGCGTCAAAACAATCTAAATCTTCATCCATCCAGAATTCATTCTGATTTACAAACGTCAATAACGTTCTTACTATAGATCTTTCCCGAATCCGCTTGGGTGAATCTtctgtttatcaaggcccgcctcaacttgaaaccattgtttcatgatcaacCAAGTGGATGCGGGCAAGGTCTATTGGCAGACGTCATAATAACCTTTAGATCGTCGTTTCATTCGTAAAGACTGACTAAGTTTTGAAACCAAACCATTCAGCCAGCACTTCGGTTGAAGAGTCTGTCGTTACAGGCTTTACATAAGGTAGATTTTCAAGTCAGGAAAACATTAATACGGAAACTTTATTGATATTATTGGTATTCCCAAGAGATTTGAAAGGGAAACAACACTGATAGTCGAATAGACCTTTACCTCCTCTGCCTGGGTATCAAAATGCc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92750	Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4B PE=1 SV=2
O00268	Transcription initiation factor TFIID subunit 4 OS=Homo sapiens OX=9606 GN=TAF4 PE=1 SV=2
P47825	Transcription initiation factor TFIID subunit 4 OS=Drosophila melanogaster OX=7227 GN=Taf4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005279 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07531 all species →	TAFH	NHR1 homology to TAF	Family	Interproscan
PF05236 all species →	TAF4	Transcription initiation factor TFIID component TAF4 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003894 all species →	Domain	TAFH/NHR1	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR037249 all species →	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR045144 all species →	Family	Transcription initiation factor TFIID component TAF4	Interproscan
IPR007900 all species →	Domain	Transcription initiation factor TFIID component TAF4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15138 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03129	TAF4; transcription initiation factor TFIID subunit 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →