Genomic Location: chr3:12059611...12064600
NR annotation: XP_031564402.1, acyl-lipid (8-3)-desaturase-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000021714 |
| Transcript |
| ENSKFPT00000021714 |
| Protein |
| ENSKFPP00000020110.1 |
| UniProt accession | Description |
|---|---|
| O74212 | Acyl-lipid (8-3)-desaturase OS=Mortierella alpina OX=64518 GN=DES1 PE=1 SV=1 |
| Q1ZXQ5 | Probable Delta(5) fatty acid desaturase C OS=Dictyostelium discoideum OX=44689 GN=DDB_G0294553 PE=3 SV=1 |
| Q9Y1W0 | Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum OX=44689 GN=fadA PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002730 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00173 all species → | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | Domain | Interproscan |
| PF00487 all species → | FA_desaturase | Fatty acid desaturase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001199 all species → | Domain | Cytochrome b5-like heme/steroid binding domain | Interproscan |
| IPR012171 all species → | Family | Fatty acid desaturase | Interproscan |
| IPR005804 all species → | Domain | Fatty acid desaturase domain | Interproscan |
| IPR036400 all species → | Homologous_superfamily | Cytochrome b5-like heme/steroid binding domain superfamily | Interproscan |
| IPR018506 all species → | Binding_site | Cytochrome b5, heme-binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19353 all species → | FATTY ACID DESATURASE 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006629 all species → | Biological Process | lipid metabolic process | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016717 all species → | Molecular Function | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
ENSKFPP00000020110.1.Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
