Gene detail

Detailed information of ENSKFPP00000020428.1 in Condylactis gigantea

Genomic Location: :...
NR annotation: XP_031568629.1, heterogeneous nuclear ribonucleoprotein A1-like 2 isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKFPT00000022046

CTTACataaccacgtgacaagaagcGAGGCAGCCATCTTAGCGTCAGCTTTATAATTGTAACAGTTTTGGTCGAGTTCTCCTCTAAAAGTCCTCAAAAATGAGCGAAAGCGAGAAACTTCGAAAGATTTTTATCGGTGGACTGAATTGGGAGACTTCCGAGGAAGGTCTGAAGGATTATTTTTCGAAATGGGGTACGATCGTGGACTGTGTAATCATGAAGAAGGATGGCAAATCAAGAGGCTTTGGGTTTGTAACATACGCTTCATCAAAGAGTGTCGACGACTGTCTGAAAGTCCGTGGACACATCCTAGATGATCGAGAGATTGAACCGAAGCGATCTATACCTAAAGATGAGGCCAAGAACCCCATGGCGATGACCAAGACAAGGAAAATTTTCGTTGGTGGCCTGGCCAGCACCACGACTGAAGATGACATTCGAGAATACTTCAGCAAGTTATGTGAAGAAGACGGCAATGGTCAGGTTATTGACATCGACTTGAAACGAGATAAAGAGAACAATTCCAGAATTCGAGGATTTGCTTTCGTCACATTTGATAACGAAGAAATCGCAGAGAAAGTGTGCGCGATGAAGTTTCACGAGATTCGCATGAAACAGTGTGAGGTGAAGAAGGCTGAGCCCCAGTCGATGCTCAGGAAGAAACACGAGGACGATGACCGCGGCAGTTACAGCTCTGACCGAGACAGAGGCAGAGATAGAGATAGGGATTCAAGAGACAGAGGGGAAAGAGACCGAGAAAGAgGCGACAGGGACAGGAGCAGCAGAGACAGAGAAAGATCCAGAGATGGTGACATGAGCTACTTCAGTCCCTTTGGCTTCAATCCAGCAGCATTTGGTGCAGGTTTTGGTCCAGGCTTTGGTTTTGGTGGAATGGGATTTGGTGGGTTCCCTGGTGGATTTGGTTATGGTGGTTTTCCAACTGGTTTTGGCATGGGGGGAGGGTTTGGGGGGTTTGGTCCTGGCAGCAGTAGTAGCGACAGAGGTGGCAGTGGAAGTAGTTACGACAAAAGTGGCTATGGAAGTGCATACAGAAGTAGCAGCGATAGAGAAGGGCAAAGCAGTAAGAGTCAATCCAATGGTTCAAGCAGTAGTACTCGAGGTTCTGGGTCGTACGACCAGACAGCCATGAGTAGTGGTTATGGGTATAGTCCATTTGCTGGTATGGGTGGTTCGATGCCTTCAGGGGATTGGAGTAACTTTCCTGCGGCAGCTATGATGGGAATGTATGGCTATAACTCAAGCTCAACACTCGGTCCTGGAAGTGATAGTTCAAAGGGATACACTGGCTCTAGCAGCACAAGTGATGCCACCTTCCCATTAGGCAACTATGGACAGATGAGCTCTAGCTTTGGCCCATTGACTCAACGAAGTGAAACCACACCAAGAGGATTAGGTTCTGCGGACAGCAAAAGCCGAAGCTACAGACCTTATTAGGTGAGTATCAAATTTTGGGCATGTTGTTACAGAAATTTTGAAGTGTCCAGCAAGGGTTTTAACCATCCAGAACTCAccgtaaataaaaaaattgaatttccTTGAATTTAGACACTGGAAAAAACAACTTTACCTTGAAGAAGTAAAGTCTTTATCGGTCTCTTAATTCCTACTGCAACAGAGTTCTACCGCAAAGACTTCATTAGATTCCCAGAtatctcttttttcctttgctccctaacttttcattttcagcaACTTGTAGAAGTACCAACTGGTAGGTATGGGTAAGTATTCATGACTGTTTTCAGATTAAACAGCATTTGTATAGAGAATACCCGATAGAATCCTCTGTCAAAAGCAACTGGATAGATTGTGTATACTTACACTGacaataggaaaaaaaaagtagAGCCAGATGTAACTAAAGTTGAGTCATAGATACAATAGTGCCTGCTGAAGAAAATCTGATTTTCTAGCTCTGATGTCTAAAATGTCAGTGAATATTCAGTTGCCACTTTATGGTGTTCAAGTTACACTTTGATTCCACTTGTTTCTGAAGAAAATCTGTATCATCATTGGTCTTTGAGGGGATTTATCACCAACACTTACACTAACTACACTTCATTAGCATGGAGTTGATGCAAGGCCAACATATTTCACCAAAGCATATGTTCAATAGGTGCAAGTTCACCAAAACGTTTGAGCTGCAGTCCTAAAGCAAATTAGCCATGTTATTGTGTAATCTAGTTTGATGTACATATAGAAAGAATCTCAGCTAATAAAAATCAATTTGCAGGTGACAGGAGACTAGCGCTGTTTAGCCAGACTAACAGACAGGAAAAACTTAAAGAAGAAACTAGAACACGTACCATATAACGTAGCTGTTGAGAAGAAGTGATAGTGAAGACAAGATCAAGTGAAGACATAAAGATCATATTATATACTAATAGGACAGAATAACCATCAAgtgtttttaatttgttaCTCTTAGAAGAA

Protein

Uniprot

Uniprot term	Description
Q96DH6	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1
Q920Q6	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1
P51991	Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens OX=9606 GN=HNRNPA3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala