Gene detail

Detailed information of ENSKFPP00000022286.1 in Condylactis gigantea

Genomic Location: chr2:7791795...7802830
NR annotation: XP_031563657.1, transient receptor potential cation channel subfamily M member-like 2 isoform X2 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSKFPT00000024159

CATTACCAGGAATTAAGTAGGCTTCGATCCTTCGTGTCACTAAGACTGGAAAGCGAAAATAAGGATCCTGAATTGATCCTGAAAGGATATTGTCCTACACATCTGAAAAAGATGTGATATTATCAGTTCCCTAGTACGTATTTAGAGAATTAAGATGATTTCTTTGGATCCGTCAACAGaaaaaagcaaaaagacGTGGATCGCAAGCCACAGCTTTGCCAGGAGAAAATGTATTCGGTTCGTGGAGAAGCCATCCAAGAAAGAAGCCGAAGACACCGGGGATCCAGTATGTCACTGTGGTCGTAAGAAGTCCAGACACAAGCAGTCATCCTTAACTGCAGACTTGTCCACAACCGACTGGACACCTGAACGATGCACCAAACCACTTCCAACCAATGCATATGGCGAGATAGACTTCCAGGGTACCGGGTCACAGAAGAGAGCGCCAtaTATTCGAACGGCACACGACACTGAAGCTAATCATCTGCTTGAACTAATGCTCAAACGATGGGAGCTCGAGGTCCCTAATCTGGTCATCTCGGTAACGGGTGGTGCAAAGAGTTTCGTACTCAAACCTCGTCTAAAGGAGGTGTTTAGGAGAGGTTTGGTGAAAGCCGCTAAGACAACCGGTGCATGGATCATAACAGGTGGGACGAATACAGGAGTGATGAAGCATGTCGGTGAAGCCGTCAAAGAACAACAACTCATGCTTGGTGTGGACTCTGAGGTCAATGTGATTGGTATTGCATCATGGGGTATCGTAGATAAACAGAAAGCTCTTATTCAAGCCAAGGGCGAGCATGGTCGCTACCCTGCCATTTACAACATGGAGCCAACAGTAGGATGGAACGGGGCATTGCTGGATTCCAATCACTCGCACTTTATTCTCGTCGACAATGGAACACTTGGCGAATACGGAGTGGAGATCAGCCTGAGGTCACAGCTTGAAGAAGCCATTATGAAGTTGCAGACGGATTCCCGCTCCAAATCTGGTTCTATTGGAGTTCCTGTGGTGCTGCTAGTTCTTGAAGGAGGGGAAAAAACAGTGCAAACAATGTATGAGCTCATCAAGAAGAAGGTCCCAGCAGTAGTGATTGCCGGCAGTGGACGAGCTGCTAACGTCATCGCCTACGCTTACAGtcatactgtcaagaaaacTGTTGATGGAAAGACGATCTGCGTCATTGACCCAGCCTACGAAGATCAAGTCAAAGAAAAAGTCAACGAGGTCTTCTCGTTCTTGGGGGAGAGCGGTGTGAACAGCTTGTTAGAAAAGATCAAGGCGGTGCTCGAAGACGATAAAATGTTGTCCGTGTATCACCTTGACGATGGTACGATATCACAAGAGATCGACTTGGCCATCCTTAAAGCTCTGCTCAAAGCCAATCGTTCAAGTCCTTTGGTGCAGTTGAACCTAGCTCTTGCCTGGAAAAGGATTGATTTAGCCAAGAGTGATCTCTTTACTGAAGACAGGCAATGGACGACCGAGCAACTATCAGGCCCAATGTTGACTGCACTGCTTGACGACAAAGCAGATTTTGTCGAACTGTTCCTCAGCAATGGCTTGAGCATGAGTGAGTTCCTTTCCGCAGAAATCCTCTGTCAGCTGTACGCTGGGGTGCCGACTAACAGTACCATCAATTCCTTACTTCAATATGAAATGGATCAACGCGCCGTGAGTAACATCAATATGCAAATCGTTGGCGATGTCATCGAGAACTTGATGGGTGACATGTACCGAAGTCACTACCTTCGAGACGGGCGATACTTCAGCGAAATGCCTTCAAACCCGCAGAAGGATGGCATGAGCCTCAAGAGAATGATGAGCAAATCCTATATCCCACTGACTGGCATCAACCGAATTGATCCCATCCCCACCCCCTACCGGGATGTCTTTCTATGGGCCGTGTTGTGCAACAGAAGGGAGCTAGCCAGAGTGCTATGGGAGGCTGGTCGTGAGCCTGTTGCGGCAGCCTTGATGGCCACCAGGCTATTACGGTCCATGGCGGACAAGTGTCAGTCAGATGATACCATCCCTGATATCAGCCATGATCTGAAGGAACATGCCAAGGACTATTAACATGCACATAATTAGGTTTTTCGTAAGTTAGTGACGAGTAGTCCTTTGGCTGTCCTCGAGTGCGTGTGTGTGTTAGTCTTGTGAGTTACACCTATGGAATCTAGCTAGATCGACTTATTACTTTCTTTCTGGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7T1N0	Transient receptor potential cation channel subfamily M member-like 2 OS=Nematostella vectensis OX=45351 GN=TRPM2 PE=1 SV=1
A0A0R4IMY7	Transient receptor potential cation channel subfamily M member 2 OS=Danio rerio OX=7955 GN=trpm2 PE=1 SV=2
O94759	Transient receptor potential cation channel subfamily M member 2 OS=Homo sapiens OX=9606 GN=TRPM2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000490 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18139 all species →	LSDAT_euk	SLOG in TRPM	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050927 all species →	Family	Transient receptor potential cation channel M	Interproscan
IPR041491 all species →	Domain	TRPM, SLOG domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13800 all species →	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0070838 all species →	Biological Process	metal ion transport	Interproscan
GO:0098655 all species →	Biological Process	monoatomic cation transmembrane transport	Interproscan
GO:0099604 all species →	Molecular Function	ligand-gated calcium channel activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKFPP00000022286.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →