Genomic Location: chr4:16670992...16674062
NR annotation: XP_031573270.1, polynucleotide 3'-phosphatase ZDP-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000025791 |
| Transcript |
| ENSKFPT00000025791 |
| Protein |
| ENSKFPP00000023780.1 |
| UniProt accession | Description |
|---|---|
| Q84JE8 | Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana OX=3702 GN=ZDP PE=1 SV=1 |
| Q9JLV6 | Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus OX=10090 GN=Pnkp PE=1 SV=2 |
| Q03796 | Polynucleotide 3'-phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TPP1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002660 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08645 all species → | PNK3P | Polynucleotide kinase 3 phosphatase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023214 all species → | Homologous_superfamily | HAD superfamily | Interproscan |
| IPR006549 all species → | Domain | HAD-superfamily hydrolase,subfamily IIIA | Interproscan |
| IPR006551 all species → | Domain | Polynucleotide 3'-phosphatase | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR013954 all species → | Family | Polynucleotide kinase 3 phosphatase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12083 all species → | BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0046403 all species → | Molecular Function | polynucleotide 3'-phosphatase activity | Interproscan |
| GO:0046404 all species → | Molecular Function | ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity | Interproscan |
| GO:0046939 all species → | Biological Process | obsolete nucleotide phosphorylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08073 | PNKP; bifunctional polynucleotide phosphatase/kinase | EC:3.1.3.32 EC:2.7.1.78 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
