Gene detail

Detailed information of ENSKFPP00000025356.1 in Condylactis gigantea

Genomic Location: :...
NR annotation: XP_020914732.1, E3 ubiquitin-protein ligase RNF14 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKFPT00000027563

CGACAAAATTGGACCAACTGGGAAGGGGATGAGGTAACCTTTCGCTTGATGATGCAACATTCAAAGTAGCCGACTTGAAAACTTCGATATAAAGCAATGTTCGAGTCAATCTTTTGATTGTTCAGCCTGCATCAAAGGTAGTAGTCTCTGTTTACGACAACGGATTAAGATAAGTTTCTACTCAGCTGaatttcaagatattttttgGCCTCAATTCGTTGGTGCTGTTGCAAGTGTTTCTCAAGTGTTCAAACTTCTCGAAATTCTTCAAAGTATCAATTCTTTCTCCAACAACTACTATGGCTGTTTGCATGGATGATGTTCTTGAAAATGCTCTGTCAGAGCAGAATGACGAGATTCTCGCTCTGGAATCAATCTTCGAGGCCAAGTTTAACTTAATCCAACAAGACGAAGATGGAGACGACAACgacgaagaaagaaaaacaatcgaATTCAACTTGAGCTTGGAAGTTCATCATCCTCACGAGAAGATTATCGTCGAAGCCGTTGTTCCCGTACTCACGCCAGAACCGCTTTCCTCGACCTCTGATTCAGACGACAACgagaatggtgatgatgaaaatggcGAGGTTATGGAAGACAAGAATGGTTGTGATGAAGTACAAGCAGAATCTAATGAACCTGGCGCTTCAGGGAGTAACTTCGCTGATGCAAGTGGCTCCCACCTTCGAAAGAAACCAGGTTTGTCCAGGCTACTTTCCACAAAGCACTGGCATATTCAATCTGAAGTGAGGTCACTCACACCCATTTATCTGTCTTGTAAGTTTCCTCCTTTGTACCCCAGTGAGGCCCCCCCGGAATTCAACATCTATTGCCATTGGCTCAGCGACTGTCAAATTGAAAAGCTGTCAAAAGAGCTACAACAGCTATGGCaggaaaatataaatacaCCAGTTGTGTTTACCTGGGCTGACTGGTTGCAGAATTCATCCTGGGATTTCCTTAGTTTATCCTCTCATCTCATCCTGAGAGaagatttcaaagaaaatttgtcatCATCTGATTATAGCATGGGAAGTAGTGCCCTTGAACTTGCACTCATAAATATCTTTGAGTATGACCTGGAGGTCCAGAGGCAAGAATTTTTCAAAGTGCCGCATACTTGTGAAATATGCTTTGAAGACAAAGAAGGAAGAGAATTCTGCTTCTTGGAGGAGTGCCATCACTTCTGTTGCTTTGAATGTCTAGCTGTACATTGCCACACTCATATCCAGTCTGGTACAGTTACAAGAATGATGTGTCCAACACATAACTGTAACGAGACCATCCCTCCTCAAGTTCTGCAAGAAATACTTGACGAGGAAACATACAAAAGGTGGGAGCGGCTTCTCCTGAGCAGGACTCTTGATATGATGAGAGATGTCTTCTATTGCCCTAGATGTAACAATGTGGTTGTGGCAGATGAAGATGAGTCTTCAAGGCTTGCACAATGTGCAGTGTGTTTTTATTCCTTCTGCACTGAATGTCAGGGACCTTGGCATGCAAGGCAATCCTGTGATggtgaagaagaggaagacgagaaagaaaaagaaattagaatgaaaaagaaaaagaagaggaggaggaagaaacAAGATgacgaagatgaagatgatgatagtaaAGAATCAAGGAAAGCCAGAGCACCAAAGATGAATACTACTAGATTCATTACAGCAATGAAAGCTAAGGGAATGTATAGAAGCTGCCCAAAATGTAGAATGGTCATTGAAAAAACTCAAGGGTGTAATTTTATGACATGTTCACAGTGTTGCACAACTTTCTGTTGGATGTGTGgaAGGTCAATATCTAGTTATAGTCATTTCACGTCGTCTTTCACATGTGCAACATTTGGTGATCCACCTCCTTCACCTAAACTGCCAAGTGAAGGCCAGCTATTGATTGCAgattacaagaaaaagaaccccggaaaaacagtcaaattaaagaaatgtcCAACATGTTCACAGAAGAACATCAAGGTCCAGAACAACAACCATCTCAGGTGCTGGTCTTGTAAGAAACACTACTGCTATCAGTGTGGAAAGAGAATTGAAGATGGATCCAAGCATTTTCTTGCTCCAAGTTCATGTACACAGCACTCTGAGGACTAACATCACTGGTCACAGCTGGGAAGGGGATGCTCCCTATGTTGAGCTATTCAAGAATTAGTCCAGAACTGGACCCacttttcacaatttttttatcGCGCACTACAATTATTTGATTGGGTCCAGTCCTGGACTATTCAAGAATGCTTTGCCCTAAAGGAGTACCTATTAGTATAAAGAATGCTAGGCAATTGCCAGTTTTGGTGTGGAAAGGGCAGAGAACTCATAAGTGGAACTTGCCCGAAAGCCAGGCAGAGTACAACCATACAAAATGTTCTGGAGTACCAGAACACTGTAACAGTCGAGGCACGGTTGTCTCCAAGctaaccgacaaccggttggctcaattGGTAGgacgccggactattgtgcgggagaccggggttcgattcccggtcggaccaacactcagggtcttaaaataactgaggagaaggtactgcctttgtaattatatctgcaaacggttagaccttcgcgtcttctcggataaggacgtaaaaccgtaggccccgtctctctaacacttcaccacttgcaccagagggacgtaaaagaacccacatcactattcggggagagtaggccgttaggccggtgtgtgtggtctgagctatagtttcgttcttaatatcagcttgatggcaaaacctttgctgattatgtaatataaataaataaataaaagcttcCAACTTGGCAAAAGAACTGGGTGTATATCTACCTACGAAGTAATATCATCCGAGAATCACCTTCTAACAACGTTTGGAAAAACAATCATCGTAGCTGGACAAGAAATCTTGTgaagaaaacgagaaaaagtAATTACAGAACTTCTATAAGCGCATGGtacctccctggtaaaaaggTGCGGTATTGCGATCGCATTTTTCACAGTCACAACTGGCAACCTCGGGATCGTCACTCGGTATCCATGATAGCGAACGCCCGCAAAAGCAAGAGTGAATTACGGAGTTTCCTTTTCAGTGTTTTAGTTGTTAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9SKC4	Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana OX=3702 GN=ARI10 PE=2 SV=1
Q8TC41	E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=1 SV=4
D3YYI7	E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773	RWD	RWD domain	Domain	Interproscan
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR002867	Domain	IBR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11971	RNF14, ARA54; E3 ubiquitin-protein ligase RNF14	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala