Gene detail

Detailed information of ENSKFPP00000027763.1 in Condylactis gigantea

Genomic Location: :...
NR annotation: XP_031561706.1, histidine--tRNA ligase, cytoplasmic-like isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKFPT00000030133

AGTCTCAGCTTCATTgagaatccaagatggcggagtCGAACGGGAAGCGAGGAAGAGAAGAACTTCAAGAAGCTATTCGTGTACAAGGAGAGATaataagaaaactgaaacTAACTGAACAGACAGATGAAGTAAAAAGCAAGacATTATGATGATATTTAGGCTAATAAACAGACTTGGGCCTCCCCTAAATGTATATACATCTAGTCTACTACCACAAGCCACTGTCCTTGCCCGTACCTATTGTCTAGACAGTAAGATAAAGGAAGAAGTAAGCAAGCTTTTGGAACTGAAAAAGGAGCTTGGAGATGATGCAAAGCCACAGAAGTTTGTCCTCAAAACTCCAAAGGGTACCAGAGATTACTTGCCCAAACAGATGGCAATAAGAGAAAAAGCTTTCAAGACAATTGTTGGTGCATTTGAAAGGCATGGAGCAGAACAGATTGATACCCCTGTTTTTGAATTGAAGGAAACACTGACTGGCAAATATGGTGAAGACTCTAAACTCATTTATGACTTAGCAGATCAAGGAGGAGAGATTTTGGCCCTACGATATgacttgactGTACCATTTGCAAGATATGTAGCAATGAATAAAATAGACAAAATCAAAAGGTATCACATAGCAAAGGTATATCGGAGAGACAACCCAGCCATGACCAGAGGAAGATATAGAGAGTTTTATCAATGTGATATAGATATAGCAGGACAGTATGATCCTATGATTCCTGATGCAGAATGTGTGAAGATTGTCCATGAAATCCTAACAGGATTAGGACTAGGAGATTTCAAAATCAAGGTCAATCACAGGAAGTTCTTGGATGGTATGTTTGCAGTGTGTGGTGTTCCTAAAGAAAAGTTCAGAACAATTTGTTCTGCTGTTGACAAGCTAGACAAGACTCCCTGGGAGGAGGTTAGAAAAGAAATGGTTGAAGAAAAAGAGTTAGATTCAGCTGCAGCTGATCGTATTGGGGAATATGTCAAGCTCAGTGGTGGAATGGACTTGGTGACAAAACTGACAGAGAACCAAGACTTGATGAAGAATAAGAATGTCAAAGAAGCTCTTGATGATATGAAGCTGCTACTACAATATATAGAACTGTTTGGTATTTCTGATAAGGTTTGGTTTGATCTTAGTCTAGCACGTGGTTTAGACTATTATACAGGTGTGATCTATGAAGCAATCTTGACAGAAGAGCAACCTGAACTGGGCAAGGCTGAAAAGGGAGAACCCGTTGGTGTGGGCTCAGTAGCAGGGGGTGgtcgctatgacaaccttGTTGGCATGTTTGatccaaaaggaaaaaagGTTCCTTGTGTTGGTGTCAGTATTGGTATTGAGAggatattttctattttggaGGCCAAGGCTGAGGCATCAGGAAATAAGACTCGGACAACCAAAGTCCAAGTCCTGGTAGCTTCTGGACAAAAGAATATGCTGGAACACAGACTGAAGTTGGTCAATGAACTGTGGCAAGGTGGAATTAAGGCCGAGTTAATCTACAAGAAAAATCCTAAGATGTTGACTCAGTTCCAATGCTGTGAAGATAATGGAATCCCCTTCTCTGTAGTGATTGGAGAAAAGGAACTGGAGGAGGGTGTGGTTACACTGCGTAACacaaaaacaagagaagaGGTGTCTGTCAAGAGAGAAGAATTATGTAATGTAATCAAGAGAAAATGTGAAGCTATAGAAGAATTATGATGTGGATTTTTAAGTAAGAAACATTCTGCATAATGATTGACAGTAATGTGTTGGCCACTAAGTTATTAAAATCTGAGAGTTATTTACTTTACcattataataaaatgaaatattttacaatagAATAGATTTCAGTCCTAAACTTAGGTAGGGATGCCAACcaccaaaaatattaaatttggAGTGTACCACATTCATTGATAACTGAAGCTTATATATAAGCACTGACAAAAttataatttctattttatttcttacctCTGAAAAGCAACCCccccaaacaaaaaaacgttTGAGGGTTTATAGAACATTTCAAGCTTTAAAAACTGGGAGATTTTGGGGCTACTTTAACTGGTAGATGAAGTTCAAATGTGGAAACTTTTGGATTACTCTAGGAGCACCCTCCTGGTATAACACCTGGATTCATTAGTGAGgaactttaaaataaaattgttgATCAAGTTgtaacattgtcacacagggAAGTCCAAACATTCAtatctcatttcattttgcCAGTGACAGAATTATAAACTGTATGATACAGTCCCTCCTTGAAGCTTTTCAGCTAAAGAAAATGCAACCTTTGATAAATTACCTTGTAAAATTGAATAAGATTAAAATTATAAGTTGCAATAATATAAGACAAGGATTGTTATTTAATAAAGTAGGACAGGACAAAGTGTTTCGTTTCTAATTTTTGTTTATAGAAAAATGTAACAACTATTCTTGTGTTGCTACACCAAATGTCTCAGACATTATCCTAGTAGTATTCTTTACATGGattaaaaaattgttaaaaatttttttaaaaacttcaaaCTTTTCATAAATTAAAGGCATTAAAATAATAGCTAACTAGGTGATATTCTCTGATGTCTTTAGGTTAACTGAAGACATGAAATGAGCCTAAATCATCAACTTTGGAACA

Protein

Uniprot

Uniprot term	Description
Q61035	Histidine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Hars1 PE=1 SV=2
Q2KI84	Histidine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=HARS1 PE=2 SV=1
P70076	Histidine--tRNA ligase, cytoplasmic OS=Takifugu rubripes OX=31033 GN=hars1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13393	tRNA-synt_His	Histidyl-tRNA synthetase	Domain	Interproscan
PF03129	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR041715	Domain	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	Interproscan
IPR015807	Family	Histidine-tRNA ligase	Interproscan
IPR036621	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR033656	Domain	Histidyl-anticodon-binding	Interproscan
IPR004516	Family	Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR004154	Domain	Anticodon-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11476	HISTIDYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004821	Molecular Function	histidine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006427	Biological Process	histidyl-tRNA aminoacylation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01892	HARS, hisS; histidyl-tRNA synthetase	EC:6.1.1.21	Transfer RNA biogenesis	ko03016	deepkoala