Gene detail

Detailed information of ENSKFPP00000028124.1 in Condylactis gigantea

Genomic Location: not available for this species
NR annotation: XP_031561699.1, inner nuclear membrane protein Man1-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Sequence

CDS

Transcript

ENSKFPT00000030495

GTCGTTTTGCATGTAATGAAGAAGAGCCAGGTGAagccaaaaatatttccataCAAGAATtagagcaaaaaataaaaggagACCATCCAAATTGGTCATCTGCTGACGTAAAAAAAGCTCATAAAGCAACTTTAGATTTTCTAGCTGAATATTCCAAGGATTATAGTATCAGGGTAtacaataaagaaaataaggaaACAAATATCACATGCGATATGAAATGGTTGGATTCTAGCAAGCCCAGCAAATCTGTTCTATGCCGAATTAAGCAGTCAATTAATAAGATATTGACTGCCCTATTGATTATTACATGTGTTGTGGCTGTTCTTGTTGGGTTTTACCTCATGGTTCGCAGTCGCTGGcggaaagaagaggaagacaCCCATAGGATGTACAAATTTGTGGAAAATATAATAGATATTTTGCGCAAGCATCATGAGGCATGCAAGACAGACAAGGATCTTCCTCCTTATCTTCCTATTCCACATGTTAGAGACATGCTGATCAAACCATCAGAGAGGCAAGCGCTGTCCAATGTATGGAACCGTGCAGTAAGATTCCTGAGTGCTAATGAGTCTCGTATACGTGTAGAGAGCCAGAGGATTGCTGGTGAGGACTTTGAAGTCTGGAGATGGATTCACGTTATGTCTCCAAAACACCATGGTCACAAGATGGCCATACCTGAATCAAAGAAACCCAAGTGTTGGCAAGGGCAAGCTTTTGAGAATTTCCAATGGGCTGTTAATCCACCCATAATAAGCCCAACTCCTTGCCTGAAGATAAGGAACATGTTTGATCCTGACGTTGAGCTGGAGGAAAATTGGCACGTGTTCATCCAGGATGCCATATTAGAGAAGTGTATTGACGCAGGTGCAAACATAGTGCATATTGCTGTTGACAAGAGTTCTAGTGAGGGCTGTGTTTATGTGAAATGTGACTCCCACCATTCTGCTGGTGTTGCCTTTAAAAATCTCCATGGATCATGGTTTGATGGTCGACTTGTTGCCGTAAAATACCTCACCCTCAGAAGATACCACCAAAGGTTCCCTAAGGCCCTTACAGCAACAGGGGCCCTGAAACCCTCTGGCACAAGCCCTTCTTCATTAGTGACCCTGGACCCTGAGGACAACATGGACATCAACGACTCAGACACAGAGGTCTAAAGATGGTTTGAATCATAGGTATTTGAGTTTATTAAGAAAGCAGTCCATGTTAGCAGTGATACCAAGTTTATTCTTCATAACAGTCTGATGCATGATTGTGTATTTGTGCAAGTGGCAAATCTGATGCCATTTCAAGgaagaatgtttttatagcaGAGGAATAAAGTTTGATGTCTTCCCCTAATGCTTCGCACGGCCATCAAATTATAATGCAAAGCTTCTAACAACCAACTCTGAGGAGCTGATGAGGGACAGGAGGGAGACATATAATTAGGGTGGAGGTTTTTGAGAAAGcgttacaaccattatcgctGAAGTGTGACCCCCAAAGCTGGATGTCTTGTTTGCCAACCAgcatttcaaaaaccatcaatcaaaagaataaaatataaaagcaatatttcaagggaaatttgagactgaatcaaacattttagaggaacagacaaagaatatcttttgtggagtctaaaatctcccgcttaaaacaagaatttagtatcatttttaatttcattcattaaaTGACGGttggcgaaatactggtcggtgaaagagacatcgaaTGTTGAGGATcacacttcaacgataatggttgtaaagagCATTAAGGTTAAAGAGGTCATTAAGGCCATATCGAAACTATCATCTTGGTAGAATTTATGGGAGCTTTTGCTACACTGACCCATACGGCAGTCATGTCTTTTTATgatattctcttgggaatgatagAAAACCACCATTTTGTTTGAAGTACCTTCCTTGATAGTAAACTGATGAATGCTCTCTTGGCATTTTATTTTCTGGATGAAAAAGCTGATGGTTTAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2U8	Inner nuclear membrane protein Man1 OS=Homo sapiens OX=9606 GN=LEMD3 PE=1 SV=2
Q9WU40	Inner nuclear membrane protein Man1 OS=Mus musculus OX=10090 GN=Lemd3 PE=1 SV=2
Q7JRE4	Inner nuclear membrane protein Man1 OS=Drosophila melanogaster OX=7227 GN=MAN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004662 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09402 all species →	MSC	Man1-Src1p-C-terminal domain	Domain	Interproscan
PF15519 all species →	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034394 all species →	Domain	MAN1, RNA recognition motif	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041885 all species →	Homologous_superfamily	MAN1, winged-helix domain	Interproscan
IPR052277 all species →	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR018996 all species →	Domain	Man1/Src1-like, C-terminal	Interproscan
IPR029123 all species →	Domain	Splicing factor RBM39, linker	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428 all species →	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006998 all species →	Biological Process	nuclear envelope organization	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKFPP00000028124.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.