Genomic Location: chr4:10555585...10581607
NR annotation: XP_031556882.1, uncharacterized protein LOC116293578 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000030616 |
| Transcript |
| ENSKFPT00000030616 |
| Protein |
| ENSKFPP00000028244.1 |
| UniProt accession | Description |
|---|---|
| P40438 | VPS10 homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VTH1 PE=1 SV=1 |
| P40890 | VPS10 homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VTH2 PE=1 SV=1 |
| A7TT43 | Vacuolar protein sorting/targeting protein 10 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=VPS10 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000638 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15902 all species → | Sortilin-Vps10 | Sortilin, neurotensin receptor 3, | Repeat | Interproscan |
| PF00801 all species → | PKD | PKD domain | Domain | Interproscan |
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF15901 all species → | Sortilin_C | Sortilin, neurotensin receptor 3, C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031778 all species → | Domain | Sortilin, N-terminal | Interproscan |
| IPR000601 all species → | Domain | PKD domain | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR022409 all species → | Domain | PKD/Chitinase domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR003529 all species → | Conserved_site | Long hematopoietin receptor, Gp130 family 2, conserved site | Interproscan |
| IPR006581 all species → | Domain | VPS10 | Interproscan |
| IPR031777 all species → | Domain | Sortilin, C-terminal | Interproscan |
| IPR050310 all species → | Family | VPS10-related sortilin family receptors | Interproscan |
| IPR035986 all species → | Homologous_superfamily | PKD domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12106 all species → | SORTILIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004896 all species → | Molecular Function | cytokine receptor activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005794 all species → | Cellular Component | Golgi apparatus | Interproscan |
| GO:0006892 all species → | Biological Process | post-Golgi vesicle-mediated transport | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
ENSKFPP00000028244.1.Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |