Genomic Location: chr6:7573520...7575491
NR annotation: XP_031560705.1, probable iron/ascorbate oxidoreductase DDB_G0283291 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000030696 |
| Transcript |
| ENSKFPT00000030696 |
| Protein |
| ENSKFPP00000028320.1 |
| UniProt accession | Description |
|---|---|
| Q54RA4 | Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0283291 PE=3 SV=1 |
| Q76NT9 | 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum OX=44689 GN=aco PE=2 SV=1 |
| A6BM06 | 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides OX=31287 GN=aco PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000370 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03171 all species → | 2OG-FeII_Oxy | 2OG-Fe(II) oxygenase superfamily | Domain | Interproscan |
| PF14226 all species → | DIOX_N | non-haem dioxygenase in morphine synthesis N-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005123 all species → | Domain | Oxoglutarate/iron-dependent dioxygenase | Interproscan |
| IPR044861 all species → | Domain | Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain | Interproscan |
| IPR027443 all species → | Homologous_superfamily | Isopenicillin N synthase-like superfamily | Interproscan |
| IPR026992 all species → | Domain | Non-haem dioxygenase N-terminal domain | Interproscan |
| IPR050231 all species → | Family | Iron/ascorbate-dependent oxidoreductase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47990 all species → | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | Interproscan |
ENSKFPP00000028320.1 in Condylactis gigantea.ENSKFPP00000028320.1.Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
