Detailed information of ENSKFPP00000029147.1 in Condylactis gigantea

Genomic Location: chr6:2972567...3000791
NR annotation: XP_031569863.1, inositol 1,4,5-trisphosphate receptor type 1-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q14643Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 OS=Homo sapiens OX=9606 GN=ITPR1 PE=1 SV=3
P11881Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 OS=Mus musculus OX=10090 GN=Itpr1 PE=1 SV=2
Q9TU34Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 OS=Bos taurus OX=9913 GN=ITPR1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002035 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01365
all species →
RYDR_ITPRRIH domainRepeatInterproscan
PF08709
all species →
Ins145_P3_recInositol 1,4,5-trisphosphate/ryanodine receptorDomainInterproscan
PF00520
all species →
Ion_transIon transport proteinFamilyInterproscan
PF08454
all species →
RIH_assocRyR and IP3R Homology associatedRepeatInterproscan
PF02815
all species →
MIRMIR domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036300
all species →
Homologous_superfamilyMir domain superfamilyInterproscan
IPR000699
all species →
DomainRIH domainInterproscan
IPR035910
all species →
Homologous_superfamilyRyR/IP3 receptor binding core, RIH domain superfamilyInterproscan
IPR016093
all species →
DomainMIR motifInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR014821
all species →
DomainInositol 1,4,5-trisphosphate/ryanodine receptorInterproscan
IPR005821
all species →
DomainIon transport domainInterproscan
IPR013662
all species →
DomainRyR/IP3R Homology associated domainInterproscan
IPR000493
all species →
FamilyInositol 1,4,5-trisphosphate receptorInterproscan
IPR015925
all species →
FamilyRyanodine/Inositol 1,4,5-trisphosphate receptorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45816
all species →
MIR DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005262
all species →
Molecular Functioncalcium channel activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0070588
all species →
Biological Processcalcium ion transmembrane transportInterproscan
GO:0005216
all species →
Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →
Biological Processmonoatomic ion transportInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0005220
all species →
Molecular Functioninositol 1,4,5-trisphosphate-gated calcium channel activityInterproscan
GO:0005783
all species →
Cellular Componentendoplasmic reticulumInterproscan
GO:0006816
all species →
Biological Processcalcium ion transportInterproscan
GO:0070679
all species →
Molecular Functioninositol 1,4,5 trisphosphate bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04958ITPR1; inositol 1,4,5-triphosphate receptor type 1-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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