Detailed information of ENSKFPP00000030217.1 in Condylactis gigantea

Genomic Location: chr7:1899166...1923583
NR annotation: XP_031550124.1, zinc finger FYVE domain-containing protein 26-like isoform X1 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E1BLZ4Zinc finger FYVE domain-containing protein 26 OS=Bos taurus OX=9913 GN=ZFYVE26 PE=3 SV=1
Q68DK2Zinc finger FYVE domain-containing protein 26 OS=Homo sapiens OX=9606 GN=ZFYVE26 PE=1 SV=4
D2H5P6Zinc finger FYVE domain-containing protein 26 OS=Ailuropoda melanoleuca OX=9646 GN=ZFYVE26 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003074 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04784
all species →
DUF547Protein of unknown function, DUF547FamilyInterproscan
PF01363
all species →
FYVEFYVE zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006869
all species →
DomainDomain of unknown function DUF547Interproscan
IPR000306
all species →
DomainFYVE zinc fingerInterproscan
IPR028730
all species →
FamilyZinc finger FYVE domain-containing protein 26Interproscan
IPR017455
all species →
DomainZinc finger, FYVE-relatedInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46591
all species →
ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0000281
all species →
Biological Processmitotic cytokinesisInterproscan
GO:0000724
all species →
Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0005765
all species →
Cellular Componentlysosomal membraneInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0030496
all species →
Cellular ComponentmidbodyInterproscan
GO:0032266
all species →
Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0032465
all species →
Biological Processregulation of cytokinesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19027ZFYVE26; zinc finger FYVE domain-containing protein 26-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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