Genomic Location: chr7:9805998...9828888
NR annotation: PFX17360.1, Poly [ADP-ribose] polymerase 1 [Stylophora pistillata]
Species Condylactis gigantea · all data for this species · gene families
| CDS |
| ENSKFPT00000033257 |
| Transcript |
| ENSKFPT00000033257 |
| Protein |
| ENSKFPP00000030729.1 |
| UniProt accession | Description |
|---|---|
| P26446 | Poly [ADP-ribose] polymerase 1 OS=Gallus gallus OX=9031 GN=PARP1 PE=1 SV=2 |
| P31669 | Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis OX=8355 GN=parp1 PE=2 SV=1 |
| P11103 | Poly [ADP-ribose] polymerase 1 OS=Mus musculus OX=10090 GN=Parp1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001312 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00644 all species → | PARP | Poly(ADP-ribose) polymerase catalytic domain | Family | Interproscan |
| PF21728 all species → | PADR1_N | PADR1, N-terminal helical domain | Domain | Interproscan |
| PF00645 all species → | zf-PARP | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | Domain | Interproscan |
| PF08063 all species → | PADR1_Zn_ribbon | PADR1 domain, zinc ribbon fold | Domain | Interproscan |
| PF02877 all species → | PARP_reg | Poly(ADP-ribose) polymerase, regulatory domain | Domain | Interproscan |
| PF00013 all species → | KH_1 | KH domain | Domain | Interproscan |
| PF05406 all species → | WGR | WGR domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001510 all species → | Domain | Zinc finger, PARP-type | Interproscan |
| IPR012317 all species → | Domain | Poly(ADP-ribose) polymerase, catalytic domain | Interproscan |
| IPR049296 all species → | Domain | PARP1-like, PADR1 domain, N-terminal helical subdomain | Interproscan |
| IPR036616 all species → | Homologous_superfamily | Poly(ADP-ribose) polymerase, regulatory domain superfamily | Interproscan |
| IPR036612 all species → | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR008893 all species → | Domain | WGR domain | Interproscan |
| IPR036957 all species → | Homologous_superfamily | Zinc finger, PARP-type superfamily | Interproscan |
| IPR012982 all species → | Domain | PARP1-like, PADR1 domain, zinc ribbon fold | Interproscan |
| IPR038650 all species → | Homologous_superfamily | PADR1, C-terminal domain superfamily | Interproscan |
| IPR004102 all species → | Domain | Poly(ADP-ribose) polymerase, regulatory domain | Interproscan |
| IPR004088 all species → | Domain | K Homology domain, type 1 | Interproscan |
| IPR047274 all species → | Domain | RNA-binding protein Nova-1/2, type I K Homology domain 3 | Interproscan |
| IPR036930 all species → | Homologous_superfamily | WGR domain superfamily | Interproscan |
| IPR050800 all species → | Family | ADP-ribosyltransferase diphtheria toxin-like | Interproscan |
| IPR047276 all species → | Domain | RNA-binding protein Nova-1/2, type I K Homology domain 2 | Interproscan |
| IPR036420 all species → | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR047275 all species → | Domain | RNA-binding protein Nova-1/2, type I K Homology domain 1 | Interproscan |
| IPR004087 all species → | Domain | K Homology domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10459 all species → | DNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003950 all species → | Molecular Function | NAD+-protein poly-ADP-ribosyltransferase activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006302 all species → | Biological Process | double-strand break repair | Interproscan |
| GO:0070212 all species → | Biological Process | protein poly-ADP-ribosylation | Interproscan |
| GO:1990404 all species → | Molecular Function | NAD+-protein ADP-ribosyltransferase activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
ENSKFPP00000030729.1.Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |