Gene detail

Detailed information of ENSKFPP00000032965.1 in Condylactis gigantea

Genomic Location: chr9:8736651...8753831
NR annotation: XP_031573390.1, phosphatidylinositol 3-kinase regulatory subunit alpha-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSKFPT00000035692

ATGGACACAGGCTGGGCGCAATTCAGGACCTTGTATGATTTCATTCCCAGAAATGATCGAGAAATCGCCCTCCGAGAAGGCGATATTTTGATAGTTGCAAAGCCCTATGGTGACGCAAAGTACTGGTTAGTGGGCAAGAATAAGAGAACAGGACAACATGGAGATTTCCCTGGCAATTATGTAGAACATATTGGTGATGTAGATGAGATTGAAGATGAAAAAGCAGAGCCTGAACCAGAAAAACCGCCACCGATTCCTCCCCGGCTCCCAAGACAGCCTACCCAAGATGGCCATAAACTGGTTAAAGTAAATGCTGCAGTACCTGTATTTTGCTGTAAATGTGATGATTTTATctggggaagagagaaagagtaCTTCAGATGTCAAGATTGTAACCTGACATTCCATTTGGGATGTGCAATAGAGCTGAAAGAATTGCAATGTATTAAGAGCAATGCTGAAGATGATAATGCTTACGTGCGCCTGGTCTCATCCATTGATCAGTGGGGAATAGAAGATGTAATGTCATGGCTCGCTACAACCAACTACTACACTTATGCCGAAGCATTCAGAGATTTTGGAGTTGATGGTCGCACATTACCTTTACTGAATGAAGAAAGCCTGGTGAAGATAGGTGTGACAGATCGAGCTCACCAGCAGTCATTCTTGTACGTTATTAAAGAGTTGTTTTCATCTGACTCACCAGAGAGGCAATCCAATATATTTGGTGGCATCCAAAAAGCTCCCAAAGGCTCAGATGGGGGACACACTTTCAAAGCTCAGAATTTCTGCAGTTTACAGTGGTGTGATAAATGTGAGAAGTGTCTGTGGGGTTTGTATGACCAGGGACTACAGTGCACAGTGTGTGGTCTATGCTGTCATAGAATGTGTAAAAGAGATGGGATACCAGTGTGTCCTATGAGAAGAGTCAAAGGAGCAAGAGACTCAGATGTTGAGGATCCAGTGTTTGGCCAGGAATTGAGTAGCCATTTCAATTCATCGACCAGACCAGCGCCAATAGCTGTCATCAAATGTGTGCAGGCAATTGAAGCCAGGGGTCTTAAAGCTGAAggaatttataaatatacaCCAGAAGGGTCCGAGAAATACTCCTTACGATCTGCTCTTAATCAGAATCCTGAATCAGTGAACATGAAAGATCAAGAGTGGGAAAATCCTCATTGTATTGCTGCTGTCTTAAAGATGTACTTCCAGGAGCTTCctacttgtctctttacagaAGAAAAGTACAATGATCTCATTGAAATTTGTCAACgtaacccaaacTGCATCGATAATCTGTTAAGAGAGATTGACACCTTACCATATCCAAACAAGTCTGTTATCAACTATCTAATGAAGCACTTCCACATGGTATGCAAGCATCGACAATACAACAAAATGTCTTCGCTGGATTTGTCTAGAATCTTTGCCCATATATTGCTGAGaccaccaaagaaaaatttaaaGAAAATGGCAACCAACCACGAGATCCAAATTCAAGTTATTGATACTCTCATAAACCAAGGACCATGGTCAGTGGAGGAAATTGCAGAAGAAGCACCACCAGCAGTTCCTCCCAGACCACATAGAACACCCAGCAAGTCCAACTCCTTTAGCAAGCCAGATCGCCTGCTCGATTTGAAAGACCAGGTTTGGTACTGGGGAGAAGCAAGCAAAGAGCAGGTTCAGGATCGTATGAAAGATACAGAAGATGGATCTTTTATCGTCAGAGACTCCAAGAGATTTCCAGGAGAATGTACCTTAACGCTGATGAAAGGCGGAGTAACAAAATTAATTCGAATTATGTATAAAAACCACAAGTATGGATTCTCGGAGCCCTTGACCTTCAACTCTGTGACGGAACTTGTCAACTACTATAGAGACAGGTCTTTAGCCCAGTATAACCCGAATCTGGACGTTAGGCTCACACACCCACTTTCCAAGTACGAACAGGAAGATGAAGCTGCTCAGCACTCGGAAAACATAACCTTAATAGAAGATTTCGAAAAGATAATTAAAGAGTTGGAAAGAGAGACGAATAATTACGAAGGCCTCCGTAAGGAATACGACGAATTCATACAGAATATTGCTGATCTCCAGTTAGTCTTGGATGCTCAGAAGACTGTGGTCTCCATGATTCAAGAACAGATCAGAATTCACGAATCATTCCAGAAGGAAGCGCCTCCCCAAGTACGCGGAATGTTAAGAACcaattttgaattgttgaagCACCGCTTGGACGAAGCACAGCGTGAAATCCTGGAATCAGAACGCGAAAACTCCAACATCACCGAAGATAGTCGTCaaaaagacaaacaaatgaatatgCTTCGATCCAAGATCATCGAGCTACAAAAGAACAAACAGCGATACACGGATATCTTGAAAGAAAAGGGCTACTCACACgaggaagtcaaagaaataGCCAACGAAGGgatttatCAGATCCCTGACATCGATATGAGCGAGAAAAACTGGAGATTTGGAAGAATTACTAGGGAAGAATCGGAGAGCCTCTTGAAGGATTGCCCTGATGGAACCTTTATGATCAGAGAAAGCATCAATAGGCAAAGAGAGTTTTCTGTCAGTCTGTCaTTCGACTTCAAAGTCCGTCACATCGCGATCTACAACGATTCCCGTGGATATTTTGGATTTGCTGCCAACTTCCTCCTGTACGAGACCCTAGCAGACCTGGTCAATCATTATCATCGGAATTCCTTGCAAAAGCACAACCCTCACCTAGCCACTAAACTTTCTTTTCCAGTTAGATTGGTACTCGAGCAACGGAAACTGAACAGATAA

Transcript

ENSKFPT00000035692

TCCACCTAATCATCATGGACACAGGCTGGGCGCAATTCAGGACCTTGTATGATTTCATTCCCAGAAATGATCGAGAAATCGCCCTCCGAGAAGGCGATATTTTGATAGTTGCAAAGCCCTATGGTGACGCAAAGTACTGGTTAGTGGGCAAGAATAAGAGAACAGGACAACATGGAGATTTCCCTGGCAATTATGTAGAACATATTGGTGATGTAGATGAGATTGAAGATGAAAAAGCAGAGCCTGAACCAGAAAAACCGCCACCGATTCCTCCCCGGCTCCCAAGACAGCCTACCCAAGATGGCCATAAACTGGTTAAAGTAAATGCTGCAGTACCTGTATTTTGCTGTAAATGTGATGATTTTATctggggaagagagaaagagtaCTTCAGATGTCAAGATTGTAACCTGACATTCCATTTGGGATGTGCAATAGAGCTGAAAGAATTGCAATGTATTAAGAGCAATGCTGAAGATGATAATGCTTACGTGCGCCTGGTCTCATCCATTGATCAGTGGGGAATAGAAGATGTAATGTCATGGCTCGCTACAACCAACTACTACACTTATGCCGAAGCATTCAGAGATTTTGGAGTTGATGGTCGCACATTACCTTTACTGAATGAAGAAAGCCTGGTGAAGATAGGTGTGACAGATCGAGCTCACCAGCAGTCATTCTTGTACGTTATTAAAGAGTTGTTTTCATCTGACTCACCAGAGAGGCAATCCAATATATTTGGTGGCATCCAAAAAGCTCCCAAAGGCTCAGATGGGGGACACACTTTCAAAGCTCAGAATTTCTGCAGTTTACAGTGGTGTGATAAATGTGAGAAGTGTCTGTGGGGTTTGTATGACCAGGGACTACAGTGCACAGTGTGTGGTCTATGCTGTCATAGAATGTGTAAAAGAGATGGGATACCAGTGTGTCCTATGAGAAGAGTCAAAGGAGCAAGAGACTCAGATGTTGAGGATCCAGTGTTTGGCCAGGAATTGAGTAGCCATTTCAATTCATCGACCAGACCAGCGCCAATAGCTGTCATCAAATGTGTGCAGGCAATTGAAGCCAGGGGTCTTAAAGCTGAAggaatttataaatatacaCCAGAAGGGTCCGAGAAATACTCCTTACGATCTGCTCTTAATCAGAATCCTGAATCAGTGAACATGAAAGATCAAGAGTGGGAAAATCCTCATTGTATTGCTGCTGTCTTAAAGATGTACTTCCAGGAGCTTCctacttgtctctttacagaAGAAAAGTACAATGATCTCATTGAAATTTGTCAACgtaacccaaacTGCATCGATAATCTGTTAAGAGAGATTGACACCTTACCATATCCAAACAAGTCTGTTATCAACTATCTAATGAAGCACTTCCACATGGTATGCAAGCATCGACAATACAACAAAATGTCTTCGCTGGATTTGTCTAGAATCTTTGCCCATATATTGCTGAGaccaccaaagaaaaatttaaaGAAAATGGCAACCAACCACGAGATCCAAATTCAAGTTATTGATACTCTCATAAACCAAGGACCATGGTCAGTGGAGGAAATTGCAGAAGAAGCACCACCAGCAGTTCCTCCCAGACCACATAGAACACCCAGCAAGTCCAACTCCTTTAGCAAGCCAGATCGCCTGCTCGATTTGAAAGACCAGGTTTGGTACTGGGGAGAAGCAAGCAAAGAGCAGGTTCAGGATCGTATGAAAGATACAGAAGATGGATCTTTTATCGTCAGAGACTCCAAGAGATTTCCAGGAGAATGTACCTTAACGCTGATGAAAGGCGGAGTAACAAAATTAATTCGAATTATGTATAAAAACCACAAGTATGGATTCTCGGAGCCCTTGACCTTCAACTCTGTGACGGAACTTGTCAACTACTATAGAGACAGGTCTTTAGCCCAGTATAACCCGAATCTGGACGTTAGGCTCACACACCCACTTTCCAAGTACGAACAGGAAGATGAAGCTGCTCAGCACTCGGAAAACATAACCTTAATAGAAGATTTCGAAAAGATAATTAAAGAGTTGGAAAGAGAGACGAATAATTACGAAGGCCTCCGTAAGGAATACGACGAATTCATACAGAATATTGCTGATCTCCAGTTAGTCTTGGATGCTCAGAAGACTGTGGTCTCCATGATTCAAGAACAGATCAGAATTCACGAATCATTCCAGAAGGAAGCGCCTCCCCAAGTACGCGGAATGTTAAGAACcaattttgaattgttgaagCACCGCTTGGACGAAGCACAGCGTGAAATCCTGGAATCAGAACGCGAAAACTCCAACATCACCGAAGATAGTCGTCaaaaagacaaacaaatgaatatgCTTCGATCCAAGATCATCGAGCTACAAAAGAACAAACAGCGATACACGGATATCTTGAAAGAAAAGGGCTACTCACACgaggaagtcaaagaaataGCCAACGAAGGgatttatCAGATCCCTGACATCGATATGAGCGAGAAAAACTGGAGATTTGGAAGAATTACTAGGGAAGAATCGGAGAGCCTCTTGAAGGATTGCCCTGATGGAACCTTTATGATCAGAGAAAGCATCAATAGGCAAAGAGAGTTTTCTGTCAGTCTGTCaTTCGACTTCAAAGTCCGTCACATCGCGATCTACAACGATTCCCGTGGATATTTTGGATTTGCTGCCAACTTCCTCCTGTACGAGACCCTAGCAGACCTGGTCAATCATTATCATCGGAATTCCTTGCAAAAGCACAACCCTCACCTAGCCACTAAACTTTCTTTTCCAGTTAGATTGGTACTCGAGCAACGGAAACTGAACAGATAAGAATGATCCACGTTTTTCTTTCGATAAATACCGAACATTTCGGTGTTACCAGTatatcggggggggggggggggtgggggattGGCCGGCCAAATCTTTACGAAAACAGAAATGATGCTTTGCGCGCCTAGTCAGGTCACTTGGATATCCATACAGCTTATGTTAttgtttgtgttttttatGTGTGTTCTCTTGTGAAGAGATCAGTAATATTGCagacattttgaaaaaatcaagaaatgtaaaataaaaagtaaaaaggtaaaaataattattagcTTAGGGTTCAAGTGTTTTCGAGGAAGTTTGGCCGATAGTTTTGTTGCCTTTCCATTTGTATGCCGAGTACATCGTCAATTGCTCACAACCTTGGATTCTGTAAGAACGGTGGTCATAAGTACCGTGTTTGACCCGGACGATGGAAAACAAAGTATTAATACTCAAGAGCTAGATAagcagaatttttttaaaaattaaaaaagattaCTCCCTAACTAAAACGTGGCTAATTGTGTTATATAAGTGTGCTATCCCATCCCGAGGTTGATTTTCAAGTTTTATCGAACTCCAGTAAAAAGCACAACGCCACACCATTTCAAGACATGCGCGTTGCAGGATGACGTTTCACggtttttgtttcttcattcTGCCCCATTTTCACCACTTTCTGTGTTCGCCATTTCGGAGTTGAGCAGAAGACTGGTTACTTatcaaagaaatattaaatatCATTAAGAAGAAACGTTTGGATAAATACTAACTTAACAGTATTGATTCATAGTATTATCAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63787	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Rattus norvegicus OX=10116 GN=Pik3r1 PE=1 SV=1
P26450	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Mus musculus OX=10090 GN=Pik3r1 PE=1 SV=2
Q5R685	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Pongo abelii OX=9601 GN=PIK3R1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003289 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF16454 all species →	PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR051854 all species →	Family	Rho-type GTPase-activating protein	Interproscan
IPR032498 all species →	Domain	PI3K regulatory subunit p85-related , inter-SH2 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46075 all species →	CHIMERIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02649	PIK3R1_2_3; phosphoinositide-3-kinase regulatory subunit alpha/beta/delta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →