Gene detail

Detailed information of ENSKFPP00000033984.1 in Condylactis gigantea

Genomic Location: :...
NR annotation: XP_031565000.1, E3 ubiquitin-protein ligase RNF13-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKFPT00000036846

AAACataattttaagattttgagGTTTAGTAAGCTGAAAATACGTAATATGAATATGTGAACTAAAAATAGATCGTCGTATGCTAATGTTGACGTCATACGTTCAATGCCCAAATTTAGAGAGCAAGTGTCGACATAACCACAAcacccgccatattggatgtGAAGTCGGAAAGAAAGTGTCTTTAAAATCTGCTTGGGACTTTATTTCAAGCCCAAATATCATGATGTAAAATACGTACAGATCTTGTTAAGGATTTCTAAGATCAAAAAGCAGCAGCTGTTCAGTGGTATCCAGCCATGAAGTTATTATTTGGTTATGTAATTCTGCTTCACTTTCTGTGTGGAATCTGGGCAAAAAATTATTATGATGATCGAAAGGGAGAAGTTTGTTTGGAGAAGAAGGGTAGCCAGTGCTTTCATTATGGTATGGCAGAATTTGGAACTGTTGCACAGTATGCTATCAAGGGTCAAATAGTACCAGCAGTGCCAGCCAATGCCTGTCTACCTCTTGAGCCAGCAAGCAAACATCAGAAAATGGACCATATATATTTTGTGTTAATTGAAGAAGGAGGCTGCACTTTTGGATACAAGACATTAATGGCAAGTGATGCAGGATATGAATTTGCCATCATTTACAACCAAAAAGATGACAAAATTGTAAGAATGGCCCCTGGCAAATATGGGGATAAAGTTGGTGAAATTATGCCAATTTATGTAGGAAagACTGCTGGAGAACTTTTCCTGAAGTACAATTACACTACAGGAACCTTTGTTACAATCTACCCTCCTCCATTCTTCCCCAATCTGGAGTTCTACCTTATTCCATTTGTCATTATTGTCGGTATCTGTTTCATTCTCATGGCCATCTTCATGGTTAGTCGGTATTATCGTAGTTATTTAGAGAAGCGCAGGAACAGGATAACACCTGCTAACTTGAAGAAGATTCCTACCAAGAAATTTAAGAAAGGTGATGAATACTATGATGTGTGTGCCATCTGTCTAGATGAATACAAAGATGGCGACAAGCTCAGGATTCTTCCATGTGATCATGTCTATCACTGCAAATGTGTTGATCCATGGCTTACAGAAGGTAAAAAGACATGTCCAGTTTGTAAGCGTCCAGTAGAATCTAGGAGATCTCGAAACAGCAGCCAGTCTGATGTAGAAAGAGGTCAAAGAAGTGGTTCTGATGTTGATGCTGATGAGACGACTCCACTCATACAGCCTTCGCCATCTGCACCATCAAATCACTTGGTCCAAGTTTAATCATCTACAATATAAACTCCTAAAATATTACAATAGTGTTTGGCATATCTTAAACATGTTCTGTATCCTATTCTGCATGCCTAAGGAGTTGTATTATGAACACAAAACAGTACTCTATGTATTGGGCATTATGTTATAAGGTAGTATAGATTTGGATAAAGAATTTGTAGTAGCATCTAGATGTGCagagaaacaaatgaaataacaCTATGAGTGCTATAGAGGTTGAGATTGCACTAAAAAATGAACTTAGATTTACATGTAATTGTACTAAATACCATAAATAGTAGAAGTGTGAACTTCTTTAAGACATTGATATTCTAACATATTATAATATCTTTAGAATATACTCCAAAAAATATACCTGAAGCCACTATTTCAATTCAATGTCATCACTTATCAGTAATGGTTAATTTTTAAGACAGTTTTTTAAGGTTAAAATCTGTTTTTACCTATAAAAGATAGCATCCTTATTCAATCAATACAACTTGTTTACATCTGATTGATaaaaagcaatagaatactctgaTGGTAGTGCAATAGTAAATTCTTAATCTACCTCACCACTGTGATTTTCATGATTgaagagccatagccaacccTGATGCACTGTGTTCATAGCTCAATTTATTCACTAtggaaaatcagcgactttgaggtaattctgaataccttttacaatccatttccatccattAGTTTAAAGAGGGTTTTGCTCTGGTCTGGCATGCTCACCATCAAAAAAGCAAGGGTATCCAGGGAGGGGCTAAGTGGTGCTGTAGCATCCCCCCCTCACCAGTCCTGTTTATCCCCTTTGGGCCCACCTTTTCCACATAatgttttatgatttcgaatcggAGCCCCTCCCCCTAAACTGATGTCTTGCATAATTTGGTCATGCCCCccctatatttttttttggctcTGCCCTTGAAAGGGGATTCCCTTTTCATTCTACTGAGCCTAAATTGGCTAACACGATCACACAGGGAAGGAGGG

Protein

Uniprot

Gene family

Uniprot term	Description
Q9H6Y7	E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1
Q90972	E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus OX=9031 GN=RNF13 PE=1 SV=1
O54965	E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02225	PA	PA domain	Family	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR046450	Homologous_superfamily	PA domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003137	Domain	PA domain	Interproscan
IPR051653	Family	E3 ubiquitin-protein ligase and sorting receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47168	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15692	RNF13, RZF; E3 ubiquitin-protein ligase RNF13	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala