Gene detail

Detailed information of ENSKFPP00000034045.1 in Condylactis gigantea

Genomic Location: chr7:8462739...8469747
NR annotation: XP_031558410.1, protein transport protein Sec23A-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSKFPT00000036912

ATGACGACATATCAAGACTATATCAACCAAAACGAAGACCGGGATGGTGTACGATTCAGCTGGAACGTCTGGCCTTCAAGCCGGCTCGAGGCAACGAGAATGGTTGTTCCTGTTGGATGTACGTATACGCCGTTAAAAGAACGACCTGATCTTCCTCCTATTTGTTATGATCCTGTACTGTGTTCTCGTAACAGCTGTAGGGCTGTATTGAACCCATTTTGCCAAGTGGACTATAGATCTAAAGTCTGGCACTGCAATTTTTGCTTCCAAAGAAATGCTTTCCCACCACAGTATGCAGGCATCTCCGAGCAACATCAACCAGCAGAACTGATCCCACAGTTCTCTACTATTGAGTATACCCTGCAAAGAGGGGGCACCCCAGGTCCTTTGATCTTTTTGATTGTACTGGATACATGTATGGATGAAGAAGACTTCCAGGCAGTCAAGGAATCACTCCAAATGTCACTGAGTTTAATGCCTCCAAATGCTCTTGTTGGCCTAATTACATTTGGCAAAATGGTTCATGTTCATGAACTTGGGTGTGAGGGATGTTCAAAGAGTTATGTATTCCGAGGAACCAAGGACTTGAATGCCAAACAGATTCAGGACATGCTTGGTATTGGCAGTAGTGCAAGAGGTCAGCCAGGCCCAAGAGGTGGCGGAGGACCCATGCCATCTCAGCAACACCAGCCCCATGATGCCTTTAACAGATTCCTCCAGCCTGTCCACAAGTGTGACATGAGTTTGACTGACTTACTGGGAGAACTCCAGCGAGACCCCTGGCCAGTAGCAACTGGTAAAAGACCCCTGAGGTCCAGTGGAGTAGCTCTGTCTATTGCTACTGGGCTATTAGAGTGCACATACCCCAACACAGGTGCACGAATCATGCTGTTCATGGCAGGTCCAGCAACACAGGGCCCTGGTATGGTTGCCGACAATGAGTTAAAGAATCCAATGAGGTCACATCACGACCTTGAAAAGGACAATGCAGCACATGTCAGGAGAGCGACCAAGTTTTATGATGCCCTATCCAAACGTGCCTCAGATAATGGACACGTCATTGATATATTTGCCTGTCAGTTGGACCAAACAGGTTtacatgaaatgaaatattgtCCCAATGCTACAGGTGGCTATATGGTCATGGGCGATTCATTCAACACAGCGCTATTCAAACAAACATTCCAAAGAGTATTTGCTAAAGATGTACGTGGAGAATTTAAAATGGCCTTTGGTGGAACTTTAGAAGTCAAGACTTCAAGAGAATTAAAAGTATCAGGTGCTATTGGACCTAGTATATCACTGGACAGAAAAGGACCCAATGTATCAGAAACAGAAATTGGCAGCGGTGGTACTTGTGCCTGGAAATTCTGTGGCATGGACCCATCAACCACAACAGCAGTCTTCTTTGAAATCGTTAACCAGCACACGGCACCGGTCCCCCAGGGTGGGCGTGGGTGTATACAGTTCATCACACAATATCAACACTCGAGTGGCCAACAGAGAGTACGAGTCACAACATGTGCACGTAACTGGGTAGATGCTACAAACACAGGGCATATTGCACTTGGGTTTGACCAGGAAGCTGCTGCAGTACTGATGAGTAGAATAGCTGTCTCCAGGGCTGAAGGAGATGATGGTCCTGATGTACTCCGATGGCTTGATCGCATGTTAATTCGCCTTTGTCAGAAGTTTGGAGAGTATCACAAAGATGACCCTAGTTCATTTCGACTTGCAGAAAACTTCTCTCTCTACCCACAGTTTATGTTCCATTTAAGAAGATCACAGTTCTTACAGGTTTTCAATAACAGTCCCGATGAAACAGCATACTATAGACACATACTAAATCGTGAAGATGTCACGAACTCCTTGATCATGATACAACCCATCCTATACTCCTACTCCTTCCAGGGACCACCAGAGCCTGTTCTGCTGGACTCAAGCAGTATCCTACCTGACAGGATTCTACTCCTTGATACATTCTTCCAGATTCTCATCTATCATGGCGAGACTATCGCTCAGTGGAAGAAAGCCGGGTATCACAACGATCCTCAGTATGAAAGCTTCCGTCAGTTGATCCAGGCTCCAATAGATGATGCTGGGGAGATCCTGCAGGTCCGCTTCCCCATGCCGAGATATATTGAAACAGAACATGGAAAGAGCCAGCAACGTTTCCTGCTATCCAAAGTCAACCCCTCGCAGACGCACAACAACATGATCGCTTGGGGACAAGACGCGTCAGGGGCACCTGTTTTAACTGATGATGTCAGCCTACAAGTATTCATGGAGCATCTCAAGAAACTTGCTGTAGCTAACACCTCATAG

Transcript

ENSKFPT00000036912

GCTACGTGGCCGGTATTACAATTTCCAAACAAGTTCCTCAACATCTTCtcgttttcttctcctttaaAGAGACGAAAATGACGACATATCAAGACTATATCAACCAAAACGAAGACCGGGATGGTGTACGATTCAGCTGGAACGTCTGGCCTTCAAGCCGGCTCGAGGCAACGAGAATGGTTGTTCCTGTTGGATGTACGTATACGCCGTTAAAAGAACGACCTGATCTTCCTCCTATTTGTTATGATCCTGTACTGTGTTCTCGTAACAGCTGTAGGGCTGTATTGAACCCATTTTGCCAAGTGGACTATAGATCTAAAGTCTGGCACTGCAATTTTTGCTTCCAAAGAAATGCTTTCCCACCACAGTATGCAGGCATCTCCGAGCAACATCAACCAGCAGAACTGATCCCACAGTTCTCTACTATTGAGTATACCCTGCAAAGAGGGGGCACCCCAGGTCCTTTGATCTTTTTGATTGTACTGGATACATGTATGGATGAAGAAGACTTCCAGGCAGTCAAGGAATCACTCCAAATGTCACTGAGTTTAATGCCTCCAAATGCTCTTGTTGGCCTAATTACATTTGGCAAAATGGTTCATGTTCATGAACTTGGGTGTGAGGGATGTTCAAAGAGTTATGTATTCCGAGGAACCAAGGACTTGAATGCCAAACAGATTCAGGACATGCTTGGTATTGGCAGTAGTGCAAGAGGTCAGCCAGGCCCAAGAGGTGGCGGAGGACCCATGCCATCTCAGCAACACCAGCCCCATGATGCCTTTAACAGATTCCTCCAGCCTGTCCACAAGTGTGACATGAGTTTGACTGACTTACTGGGAGAACTCCAGCGAGACCCCTGGCCAGTAGCAACTGGTAAAAGACCCCTGAGGTCCAGTGGAGTAGCTCTGTCTATTGCTACTGGGCTATTAGAGTGCACATACCCCAACACAGGTGCACGAATCATGCTGTTCATGGCAGGTCCAGCAACACAGGGCCCTGGTATGGTTGCCGACAATGAGTTAAAGAATCCAATGAGGTCACATCACGACCTTGAAAAGGACAATGCAGCACATGTCAGGAGAGCGACCAAGTTTTATGATGCCCTATCCAAACGTGCCTCAGATAATGGACACGTCATTGATATATTTGCCTGTCAGTTGGACCAAACAGGTTtacatgaaatgaaatattgtCCCAATGCTACAGGTGGCTATATGGTCATGGGCGATTCATTCAACACAGCGCTATTCAAACAAACATTCCAAAGAGTATTTGCTAAAGATGTACGTGGAGAATTTAAAATGGCCTTTGGTGGAACTTTAGAAGTCAAGACTTCAAGAGAATTAAAAGTATCAGGTGCTATTGGACCTAGTATATCACTGGACAGAAAAGGACCCAATGTATCAGAAACAGAAATTGGCAGCGGTGGTACTTGTGCCTGGAAATTCTGTGGCATGGACCCATCAACCACAACAGCAGTCTTCTTTGAAATCGTTAACCAGCACACGGCACCGGTCCCCCAGGGTGGGCGTGGGTGTATACAGTTCATCACACAATATCAACACTCGAGTGGCCAACAGAGAGTACGAGTCACAACATGTGCACGTAACTGGGTAGATGCTACAAACACAGGGCATATTGCACTTGGGTTTGACCAGGAAGCTGCTGCAGTACTGATGAGTAGAATAGCTGTCTCCAGGGCTGAAGGAGATGATGGTCCTGATGTACTCCGATGGCTTGATCGCATGTTAATTCGCCTTTGTCAGAAGTTTGGAGAGTATCACAAAGATGACCCTAGTTCATTTCGACTTGCAGAAAACTTCTCTCTCTACCCACAGTTTATGTTCCATTTAAGAAGATCACAGTTCTTACAGGTTTTCAATAACAGTCCCGATGAAACAGCATACTATAGACACATACTAAATCGTGAAGATGTCACGAACTCCTTGATCATGATACAACCCATCCTATACTCCTACTCCTTCCAGGGACCACCAGAGCCTGTTCTGCTGGACTCAAGCAGTATCCTACCTGACAGGATTCTACTCCTTGATACATTCTTCCAGATTCTCATCTATCATGGCGAGACTATCGCTCAGTGGAAGAAAGCCGGGTATCACAACGATCCTCAGTATGAAAGCTTCCGTCAGTTGATCCAGGCTCCAATAGATGATGCTGGGGAGATCCTGCAGGTCCGCTTCCCCATGCCGAGATATATTGAAACAGAACATGGAAAGAGCCAGCAACGTTTCCTGCTATCCAAAGTCAACCCCTCGCAGACGCACAACAACATGATCGCTTGGGGACAAGACGCGTCAGGGGCACCTGTTTTAACTGATGATGTCAGCCTACAAGTATTCATGGAGCATCTCAAGAAACTTGCTGTAGCTAACACCTCATAGGATGACCTCTGGATGAAAAAGTCTGGCTTGGGCTGCTTGTGTTTTGTTCCTTTCGCAAGGCGCAGGTTAAATGTCGAACATCACATGAGTCAAGCCTACGAGTAGTGATGCTTTTGGCTCATGTAAAGTTGGACATTCGACCTAAGCCTTAGTTACCTAAGAAAACCCACCCTAACGTCATCCCTACAGTCTAAACTGCACACAACCCCTCATTTGTAGTGCATTTTGTATGAAAGCTTGCTCAAAGATTACACTTACTGGAGTGAAGGAAAGAGATCATCATCGTTCTTTTTCTCAGATATCTGTCTTGAGAACACCTTCCACACTGCTTAATACTGTAGCTTCTACCCTTGCACTTAGAGTACTTTGAACATCAGTATTTTAGATGTTACTTAACCATTGTCCTAGCCTAAAGTTCAGCCCAGAGTATTTCATAAAGTTACACCTCACaaaagaatattataaattgtttaGTTGGATCGATATGATCAAAAGATTTGATGTTTGCTCAATTTGTTCCCATCGAATGTGAGTATTCGATCCTAAGAATGGAATCATGTATTCTAAGCTtctgtattttctttttttcctcacaAGGCCTATGCCACCAATGGCACCACCAAAAAAAGACACTTGTGCGTGTCACGATCTGAAGGTGATCCAAATTGCAGCGGCCAAAATCTCATCTTGCTATCTTCGGAGTAAAATCAAAATCCTATACTACTGTGGtttctttttgatgttttttaaaactttgttcTTCATAGTTTTTCTGAAAAGGTTGTGTAGAACTTTGTTCTTTTTCGAGAGAGAAATGCTCGCTCCACCCGCATCAAGCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15436	Protein transport protein Sec23A OS=Homo sapiens OX=9606 GN=SEC23A PE=1 SV=2
Q01405	Protein transport protein Sec23A OS=Mus musculus OX=10090 GN=Sec23a PE=1 SV=2
Q5R9P3	Protein transport protein Sec23A OS=Pongo abelii OX=9601 GN=SEC23A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005158 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04811 all species →	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan
PF08033 all species →	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan
PF04815 all species →	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF04810 all species →	zf-Sec23_Sec24	Sec23/Sec24 zinc finger	Domain	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR006896 all species →	Domain	Sec23/Sec24, trunk domain	Interproscan
IPR012990 all species →	Domain	Sec23/Sec24 beta-sandwich	Interproscan
IPR036174 all species →	Homologous_superfamily	Zinc finger, Sec23/Sec24-type superfamily	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR036175 all species →	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR006900 all species →	Domain	Sec23/Sec24, helical domain	Interproscan
IPR037364 all species →	Family	Protein transport protein Sec23	Interproscan
IPR006895 all species →	Domain	Zinc finger, Sec23/Sec24-type	Interproscan
IPR037550 all species →	Domain	Sec23, C-terminal	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11141 all species →	PROTEIN TRANSPORT PROTEIN SEC23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan
GO:0090114 all species →	Biological Process	COPII-coated vesicle budding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14006	SEC23; protein transport protein SEC23	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →