Gene detail

Detailed information of ENSKFPP00000035294.1 in Condylactis gigantea

Genomic Location: not available for this species
NR annotation: XP_031556804.1, probable ATP-dependent RNA helicase vasa-like isoform X2 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Sequence

CDS

ENSKFPT00000038260

ATGTTTTATTATAGTTGCGATAGTGGTGGTGGCTATAGAGGAAGCTCTGGCTTCTCATCTGGCACTCCTCAAAGAGACAAGGTTTATGTGCAGAATATTCCCTTGACCATGCAAGAGGATAGTGTCGAGGCTCTTTTTGGTAAATGTGGGCACGTCGTAGAAGTCAAGCTTCTTCCAGCTAAAGATGGAAGGAACACGGTAGCAGGgtTTATCAAGTATGCCACGGAAGAAGCTGCACAACAAGCTATCAACCAGATGGCAGGCTGTGTCATAGGTGAAGGACCCCCATTACGTGTCATGTGGCCTGCCAGCAAAGGCAGTTCTTCCAACACAATAGATGGAAGACGAGGAGGAGGAGATCAAGGTAACAGACAGAACTATAATGAAGGACAAGGGAGGCCAACAGAAAGTCCATTTGGGAGTTACTCCAACGGGCCTTCACAGCAGACAAGTTCATACAGAGAAAGACAACCTATGATGAACAGTTCTTATCCATCAAATTCTCAGCCTACCTATGGAAACCAGAATGCTGGGCAGGCCAATTTCATGTCTCTGCTTGGGCGGGGCGAGAACAGGAGAATGAATAGTTCCAAGCCACCAGGTGGTCTACAGAATTATGGAGAGAATATGCAACAAAGTAACGACTATCTGTCATTGGCACCTCTGAAGACTTCTCCAAATTATCCCAATTCTGTATCACAGCAAAATGGATACAGTGAAATGCCAGCAAGGCAAGGTTACAACCAGGCACCACAGTACCAACAAGAGATGCCGAGCACAAACTATCAGCAGCAACAACCAGCACAAGGGTACCAGGAAGAACCACTAAGCAATGGTTATCCACAGCAAGTGCCAGAACAACAACAGTACCATTACCAGGAACAGCAGCAAGACCATAATTACCAGCAGCCTCCTGCTCCCCAAAGACACCAACAACAGCAAGGAAGTGATGGTTTCCAGCAAGGACACCATTTCGAACAACCTAGTACTCCTTACCAACAACAATCGGGTCCTGAGCAAGGTTATCCGTTTGGCGGCCAAGCACAGAACCAGTCATCATGGCAACCAAGAGCAGAACCAAGGTCATTTGGAAGAGACAAGACCTGCCATAACTGTAAACAGTTAGGCCACTTCTCCAGAGAATGTCCAAACCCCAGAACACAAGGTGGTCAGACATGTCATAGATGTGGTGATGCAGGTCATTTTGCTAGAGAATGCCCTACCTCACCTGGACCAAGTAAGTTGATGATCTTGACTTTGTGCCTTTTCAGGCGACAAACTTTATTGACATTAAGTGGTGATCAATTATGTCACAAGTGTGGAGAAGCTGGGCACTTTGCGAGGGAATGCACAAACTCTTCAAGTAGAGGTGGTGATCAACTGTGTCACAAGTGTGGAGAAGCAGGACATTTTGCCAGAGAATGTACAAACTCTCCAAGTAGAGAGTCAACAAGGCCGGGCCCTGTAACCTACATCCCCCAAGAGCTCCCAGAAGACATGGACGCCCTGTTTCAAGATATGCCACATACAGGAATCAACTTTGACAAGTATGACAACATTCCCGTGAAGACATCTGGTCATCAAGGCCAAGAAGCTCCGCCCCCTGTCAACACTTTTGAGGAAGTCAACTTTGGCAGCCAGACAAAGATGAATATTCGACGTGCTGGTTTTGTTAAACCAACCCCTGTGCAGAAGCATGCTTTCCCTATTGCTATGTCTGGGCTTGACCTCATGGCTTGTGCTCAAACTGGTTCTGGTAAAACGGTTGCCTATCTCCTTCCCACCCTGACCAGCATCATCAACAATGGCATCCCACCAGCATCTCGGTCTCCTCTCGTCATTATCATGGCACCCACACGAGAACTAGTCATGCAGATCTACAAAGAAGCCAAGAAGTTTGCCGACGGTACCCCAGTTAACGTGGCTGTGGCTTATGGGGGTGTGAGTGTCGCCTATCAGGCTCAGCAGTTTGATCGCGGCTGTCATTTCCTTGCTGCAACTCCTGGGAGGCTGCAGGACTTTGTAACTAGAGAAAGGGTGTATCTTGACGGTGTGAAGTATTTGATCCTAGACGAGGCAGACCGCATGCTAGACCTAGGTTTTGGTCCCTCCATTCGCAAACTCGTTCAAGAATGCAACATGACAGCTAAAGAACAAAGACAGACCCTCATGTTCAGCGCTACCTTCCCTAACGAGATCCAGCGTCTAGCAGCAGATTTCCTCAGGCAGGACTATATCTTCTTAGCTGTGGGTTGTGTAGGGGGGACTAACTTGGATATCGAACAGCATATCATGAAGGTCAATGGCAATGACAAGAGGAATAAACTGTTTGATATCTTAAACGAATCTGAGATTCTAAAGGCTTTGTTGTCTTGGTTCCCTTTATATAGTGACCGATCACAACAAGAACGCGAAGCAGCATTGCGTGACTTCCGTAACGGACGAGCAAACATCTTAGTGGCCACATCAGTAGCAGCACGTGGGCTTGATATCCCGGATGTCAAACACGTGATCAACTATGACCTTCCTCAAGAGATTGACGAATATGTCCATCGTATTGGAAGGACGGGGAGGATTGGGAACAAGGGAAAGGCTACCTCATTCTTCGAGCAAGGACGAGATGAGAAACTGGCGCGAAGTATGGTCAAAGTGCTAAGTGAGGCATTCCAAGAGGTCCCAACGTGGTTAGAGCAAACAGCTGAGGATGCTGTTGGATCAAGCTATGGGCCAGCAGGAGGACGCTTCACCTCTAAAGATCACCGGCAGGGTGGCGGAAGAGGACGAAGAAGAGATGACGACCAGTACATCAACAACGCCATGTCAAACCTAAGCATACAAAACGACCCTAACTCTAACTTCGGGTCGAAGCCATACCGTCAAGACCACCAAGCCGCTGGTTACCCTACCAGCACCATGCAGGATGGATCTGCATATAATATACCGCCACAGGGATCCCGACAAGTAGTGCCGCCCCAGGGGGGTGGGAGCAGGGGAACAACCGgagatagtgatgatgattggGATTGA

Transcript

ENSKFPT00000038260

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Q6GWX0	Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa OX=9823 GN=DDX4 PE=2 SV=1
Q61496	ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13982	DDX4, VASA; probable ATP-dependent RNA helicase DDX4	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.