Gene detail

Detailed information of ENSKFPP00000035490.1 in Condylactis gigantea

Genomic Location: chr9:60930...65261
NR annotation: XP_031557465.1, FGGY carbohydrate kinase domain-containing protein-like isoform X1 [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSKFPT00000038474

CTTGTATAACAGGTTCCCGGATGTTCCGACACAACAAACATGGCGACTCAATTGCCTATAACTCTTTGAACGCATAGCTTCACTAGCTCTCTCGTTCTCTATGGATTCATATTATATTGGAGTAGATGTAGGAACGTCTAGTGTACGAGCTGGCCTTGTGTCAAGTGATGGGCGCCTTACTGATTTCTGCAGTCGGCCTCTTCAGATATGGCATTATGACACCGACTTTTATGAACAGTCCTCACAGGATGTCTGGGAAAACTTGTGTAAAGTTGTCAAGACTATTGCTGATAATATCAAAGACAAAAAAGCTGTCCGTGGAATTGGATTTGATGCAACTTGCTCgttagttgctttgaattcaGATGGAGATGAAGTGCCAGTAAATAGATCTCAAGATTCCAATAGGAATATTATCATGTGGATGGACCATCGAGCCATCAAACAGGCAGAGTTCATAAGCAGGACCGGCCATGAAGTTCTAAAATATGTTGGGGAAGTACTATCACCCGAAATGCAAGCAGCAAAACTTGTTTGGTTGAAAGAAAATCTTCTGAATGTTTGTTGGAATCAAACAGCTGTTTTCTTAGATCTGCCAGAGTACTTGACCTACAAATCGACTGGTCAATTAACCAGATCCATGTGTTCATTAGTCTGTAAATTCAATTACATGGGCCATGAAACACAAAGACCTGCAGGAACATCATCTGGTTGGATTGACTCATACTGGGAAAATATTGGCCTCGAGGAGCTGCCTCTAAGTGGATATTCGAAATTAGGTATCAACGCAGAAGAACCTGGTGAGCCTTTGGGCCATGGGTTAACACACACAGCAGCAGAGCAAATGGGATTGTGGGAAGGGTGTCCTGTTGGCTGTTCTCTCATAGATGCACATGCAGGAGGAGTTgGAGTGATTGGAGCTGATGCCACTGGGAGGAGTTTACCATGTGAAAATCAACCTATCACAAATCGTCTGGCCCTGGTCTGTGGAACGTCTACATGCCACATGGCAGTCAGTGAGAAGCCCATGTTCGTCAAAGGAGTATGGGGACCATATTATTCTGCTATGGTGCCAGGCCTATGGTTGAATGAGGGTGGACAAAGTGCAACTGGAAAACTGaTTGATCACTTAGTAGAAAACCACCCAGCTTTCACTGAACTGCAGGAAATGGCAAGAACAAAGGGCACATCAACATATGAAGAGCTTAATAGGGTGGCCATCCATCTTAGTGATGAGAAGGGCCTAAAGAATCCTGCCTTCCTTTCACAAGATTTCCATGTCTTACCCGATTTCCATGGCAACAGATCACCTATTGCTGATCCTAACTTGAAGGGAATGATTTGTGGTTTATCATTGGCTTGTGATATCAGAAACTTAGCTGTCTTGTATGTGGCAATGGTACAAGCTCTTGCTCATGGAACCCGTCATATTGTCGATTGTATGAACACATCTGGTCATGATATAAACACATTATTCCTTTGTGGTGGACTCAGTAAAAACTCATTCTTTGTTCAAACACATGCAGATGTCACAGGAATGCCCTGTGTTCTACCACGAGAAAGTGAATCTGTCATTTTGGGTGCAGCAATACTTGGAGCATGTGCTTCTGGAGACTTTGGAACTGTTCGGGAAGCAATGAAGAAGATGAGTGCCATAGGCAAAGTATATCTTCCTGAAGTCGGACTTAAGAGCTTTCATGACAAGAAGTATAAAGTCTACCGTCAGATGTTGAAGAACCAAGATGAATATCGACGAATCATGAACAATCAATGAATCATAAAAATTAAGTTATTGGGAATTTAtattaatcaataataatactttCTAATCTTTTTAAAgcaatattaataaatatttcctcATATAATTTGGGTATAAGACCTGAATTTCTTAAGTTGTGTTTGAAACACTATAATATATAGGGGATCACCTAAATCAAAGTTCGAGATATGGGGATTTAGGATGGAGGATTGGAGAACAATGTTTTGATCGAAAATCTTCCATCTTCAATAATATTATAAGCATCTTACTGCTTGCAATTGCTcatggaaaataaaaatctagTTAGAATCAATCTACTTCTGTGTATGTTAAATATCAGGGCATGCTGGATGTGCGATATCGTCGTGCTTTAATTCCACTTGACACTTCAGTCTTTATGCCAACACTTTTTCCACCAATCAAGAGTTCTCTTATACTGCCTTGAAAAGTTGGCCAATTACGTCTTTCTGTGAATGGCTTCTGGGATGGGAATCCACCTAAGACACATGACATTACCAATGAAAAGCATTCTTCAATCACATTCATCAACAATACTACTCAAATTACTTACCAACAATGACTTCCCCTGGGTGGAATTGCAGGAAAAATTTATCAACTATCGTCTTCTTTGGAATACCACTATCGATTTGGACAGATAATGTAGATAAAGTCCTACAGAAATGACATCAACCCAATAATATGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJL3	FGGY carbohydrate kinase domain-containing protein OS=Mus musculus OX=10090 GN=Fggy PE=1 SV=1
Q96C11	FGGY carbohydrate kinase domain-containing protein OS=Homo sapiens OX=9606 GN=FGGY PE=1 SV=2
Q6DCD1	FGGY carbohydrate kinase domain-containing protein OS=Xenopus laevis OX=8355 GN=fggy PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005718 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02782 all species →	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006003 all species →	Family	FGGY carbohydrate kinase, pentulose kinase	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR018485 all species →	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR000577 all species →	Family	Carbohydrate kinase, FGGY	Interproscan
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43435 all species →	RIBULOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016773 all species →	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019150 all species →	Molecular Function	D-ribulokinase activity	Interproscan
GO:0019321 all species →	Biological Process	pentose metabolic process	Interproscan
GO:0046835 all species →	Biological Process	carbohydrate phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00875	rbtK, FGGY; D-ribulokinase	EC:2.7.1.47	Pentose and glucuronate interconversions	ko00040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →