Gene detail

Detailed information of ENSKFPP00000035879.1 in Condylactis gigantea

Genomic Location: chr9:3836187...3847323
NR annotation: XP_031567992.1, oxysterol-binding protein-related protein 9-like [Actinia tenebrosa]
Species Condylactis gigantea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSKFPT00000038878

ATGGCGGTGGTGATGGAAGGTCCCTTGTCTAAATGGACGAATGTAGTCAAAGGATGGCAGTACAGATGGTTTGTCTTGGACGACAACACTGGCCTATTGTCATACTATACGtCCAAAGAGAAAATGATGCGAGGTGCAAGAAGAGGCTGCCTGCGATTAAAGGGTGCAAACTTAGGAATtgacgatgaagatgacaGTACTTTCACAATCAGCTGTGaccaaaaaacatttcattttcaagCTCGGGATGCTGAGGAGCGGGAGCAATGGATTCGAGGGCTTGAGGATACGATAAAAAGGCATTCCCAAGTTAGAAAGAGAGCAGTGATTGGAagagattttgagcattttgacCCAACAAGAGAAAGCCTTGACCAGAGACTAGCTGAGACTGAAGCCTATTATAAaattttaaccaatcaaatcaAGATAATTAAGAACCAGATGAATGCTGATGTTGATTGTCGTTCTTCACAAGTAAGATGTGCTTTCTCTTTTCAGAACATGCTGGATTCAATTGGGAAATGTCTAGAACTAATGTACTCCATTAAAGAGGAATGCCAAAAATCTGCTCCCAAGCCACCACTGGACACCCAACCCCTACTGGACATGGTCAGTGACCATTATTCAGAAGAAGCATCAAAAACTAACATCCAACAAAATGAAATCCCCAATGACATTTCTTCCATATCTTCAAATGAACGAAAAGGGGACACCTCTCCAGATAGGCGAACAATGCGACAAAGCAAGAGCGAGTCATCACTCTCCATTGAAAAACAATCACCATCAAATACAAATCAAGATGACAGTGATCTAAAACTTTGTCGAGTAATGTCAAAATCTAGTTTTGAACTGACAACACCAACAACAGAAGTAGCATCTTTAAGTTTGGACACTTCTGCTCCTGCAGAAAAATCAGCTCGAACAAATGTACCAGCATCGTCTACTAGTGGTTTTACATCTCATGTCACTTATGCTCTAGCATCTCCAGTTGTTAGGGATGTAACTGTTCCATATGCATCGTATTCTAGcagtgatgaagaagatgtGGAGTTTTTTGATGCATCTGAGTTTTCAGAAAACAgcattgaaaagaaagatgaagaaaGtTCTCAAAAACCAGCATCCTTACAAGTAGCGATTCTTGATGATGAAGATGAATATGAGCCACTTGATGAGGATGTCTATGGGAAAGAGTTAGGAGCTGATGCTGTAGAGCAGCACAGTAGTGTTATCACTCATTTGCTATCACAAGTCAGGCTAGGAATGGATCTGACAAAGGTAGTGCTACCAACTTTTATTTTGGAAACAAGGTCATTATTAGAGATGTATGCagatttcttttctcatcCAGACCTCTTTGTGGGaatCGTCGAAAAGAAAACACCTCAAGAGAGAATTGTACAAGTTCTTCAGTGGTACCTTTCTGCAATGAGTGCTGGAAGAAAGGGGTCGGTAGCAAAGAAGCCCTATAACCCTATCCTAGGAGAGACTTTTCGTTGTTTCTGGACACTGCCAGAATATGCTGCTACTAGAGATAAGACACCTGTTACAGATGGTCCTGTTCCTTGGGCATCAAAAGATGACGTGACGTTTATAGCTGAACAAGTGTCACACCATCCACCAATCTCAGCTTTCTACGCAGAAAATCGTACCAAGAAGATCTCATTTGGTGCACATATCTGGACCAAGTCAAAGTTTCTTGGCTTATCTATTGGTGTAGAGAACATTGGGCAAGGTAAATGCAGTCTCCAGTCCTTTGCCAAGTCCTTTCCCAAATCGATCCTTACAATCCCATGGACAGAGATTGGTGGTAAATCATCTATAACCTGTGCTAAATCAGGATACAATGCCTTGATACAATTCCATTGTAAGCCTTTTTATGGAGGAAAGAAGCACCGCGTAACTTGTGAAGTGATGGCTCCAAACGAAAAGAAGCCATTTCTGACTATCAATGGGGAATGGAATGGACTGATGTTTGCTAAGTACGCTGATAAAGAGGAAGAAGAACTCTTCATAGACGCGAAGAATTTCCCTACCTTTAGAAAACTAGTTAAGAAGATCGAGAACCAAGGAGAGTACGAGTCGAAAAGGTTGTGGAAAGATGTGACATACAACTTGAAACATTCCAACGTGGACAAAGCGACCGAAGGCAAACACATGCTCGAGGAGAGACAAAGAGCAGaagcaagagaaagaaaggaaaaaggaacaAAGTGGGAAACTAAGTTATTCCACGAAGTTGGAGGTCATTGGCTGTACGATACGCCACTACAGAAGGTTCTAAACCAAGAGAGCTGCAATTCATAG

Transcript

ENSKFPT00000038878

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96SU4	Oxysterol-binding protein-related protein 9 OS=Homo sapiens OX=9606 GN=OSBPL9 PE=1 SV=2
A2A8Z1	Oxysterol-binding protein-related protein 9 OS=Mus musculus OX=10090 GN=Osbpl9 PE=1 SV=1
Q5R9W4	Oxysterol-binding protein-related protein 9 OS=Pongo abelii OX=9601 GN=OSBPL9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001309 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01237 all species →	Oxysterol_BP	Oxysterol-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037239 all species →	Homologous_superfamily	Oxysterol-binding protein superfamily	Interproscan
IPR018494 all species →	Conserved_site	Oxysterol-binding protein, conserved site	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000648 all species →	Family	Oxysterol-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10972 all species →	OXYSTEROL-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015248 all species →	Molecular Function	obsolete sterol transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20465	OSBPL9_10_11, ORP9_10_11; oxysterol-binding protein-related protein 9/10/11	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Condylactis gigantea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Condylactis gigantea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →