Gene detail

Detailed information of ENSKKQP00000001516.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029187226.2, pseudouridylate synthase 7 homolog [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000001943

atggcggacgaAGACGCTCTCCAACAGCCAGAATGCAAACGTCCGAGATTAATTACTgaatcaaaagaaacaaacttcGATAATGTGAGTGACTGCAAAAACATCACAGAAAGTGATGGTGGTAATTTTGATGTCGTTGATTGTAAAAAGAGGGAAGAAAACGCTTACAAAACATTAAGCTTTGGTCTCGACACAAACCAACACGTGCAAAgcgaggaaaagaaagaaactgagAACATTTTAGCAGGGATTAAAACAGGTGAATCAGCGAATGAATATTCAAGAGATAATCCTGGTGCTTTGAAATTCGCAAGCGTTTCTGACGCAGATGTAGGGATTGTTGAGTTTGTTAGCAGACTTCCCGGGTTCCATGGCATTTTAAAACAGAGGTACACAGATTTTATCGTAAGCGAACGTGATCCAGAAGGGAGCCTCGTACGTTTAACAGATGTCTCACttccacaaaaagaaaagacaaagcAATTTAATCTTGATATTCTGAGTCCAGAGGATAGAGAGAAAATTCAGCAAGTAGTTGATGATGAAACGAAAAGCAAGTCAGTGATTTTATCGCCAAATGATGACAAGGGAAACCGTACTTTGGTTCATCGTGCCATCCGAGAGAATTTCTCCATGTTAGACAGTGATACAGTTGATGTAGAAAATCAGAAAGCCGTCAGAGTCTTTCACAAGCAAGATTCAACtgggaaacaaaggaataatCGCTGGCCTCAAGAACTGGACAATTACTGCTGGTTTGTGCTTTACAAGGAAAACAAAGACACTATGGATGCAATAAATCTGTTAAGTAAACTTTTGAAGATCAAAACAGGTGTTTTTGGTTATGCAGGAACAAAGGATCGCAGGGCTGTAACAACACAGTGGATTTCTGCCTATAGGGTGCGTGCAGAACAGCTCAAGTCTCTCAATTCCTCCTTGAGGAATTTATGCCTTGGAAACTTCAAGTATTGCAAAGAACCACTTAAACTTGGTTCTCTGTCTGGAAACCATTTTATTATTACACTTCGCAGCATTGTTGGAGATCACAGCAAGATTGAGGAGAGTCTGGAATCATTGAAAGTTAATGGCTTTATTAACTACTTTGGTCTGCAGAGGTTTGGGACTACATCAGTTTCCACACATGCAGTAGGTCTTGCGTTGCTTCAAAGTAAGTGGTCAGAAGCGATTGATCTGCTTCTCAATCCACGTGATGGAGAGTCAGATATCTTGACAGCTGCTCGTCAACACTGGAAAGACACTAAGAATGCTAAGGAAGCCCTACAAAAAATTCCCAAGGGAAAGTTCATTGAGAGTGATCTCTTGCAAGGTCTGGTACGGCACGGCCCAACAGGCCTTGTGAATGCATTGCAGAGCATACCGAGGAACACACGGCTTATGTACGTTCATGCATATCAGAGCTATGTTTGGAATTTCATGGCGACGAAGCGCATTAAGGAGTATGGACTTCAGCCAGTCAAAGGAGACTTAATTGTGAAATCTGCATCTTCCGTTGGGTGTGCAGAAAACGCAGACGTATCTCAAGCCGGGGGTATGGTACAATTCATTGCTGAGCCCAGTCGTAGCACAGTAACTGTTCTAACAGAAGATCACATCAAAAGCGGAGATTTTACAATCCAAGATGTGGTTCTTCCTCTTCCGGGTTACGATGTAAATTATCCTGAAAACAATATGAAAGATCACTACAGGCAGATTATGGCGAACGATGACCTTGATATTGATAACATGCGGCGAAAAGTGAAAGATTACGCCCTGTCTGGTGCATATCGGAAGTTACTTGTCAAACCCAGCCAAATGAACTGGCGTTGGTTTCGTTATAATGACATCAAAGAACCGCTGGCCTTAACTGATATGGACCGACTCAAAGGTGCTCAGGAACCACAGTCAGTTCCAGATGGAAAGTACTGGGCACTACAGTTGGGATTCACATTGCCGACATCAACGTATGCAACAATGGCTTTACGTGAAGTTCTCCGCTGTAATACGTCATCAGCCTACCAGGCGTCGCTAAATCAAGACTAA

Transcript

ENSKKQT00000001943

TTCCATTTGCCAACACACTCCTCGCCAACATCTTCTATTACACCGGAAATCTCCAGGCCCAAGATGTCTGACTCTCCCGGTGGTGGAGGATACAGGCCACGCCGTTGCAGTGTGTCTGCTCGGTTCAGAGCCGTGTAGTAAGTTCGGATCAACACCTTAGATTTCTCAGCGGCTGGCTTAGCTACTGTTCCAGTTCTCAGATTGGATATATCACCAGGTGTATAAAGAACTGCTTTCATGACGAAGTACTGCTGAAAGCAGGCTCAGTtttcaacatggcggacgaAGACGCTCTCCAACAGCCAGAATGCAAACGTCCGAGATTAATTACTgaatcaaaagaaacaaacttcGATAATGTGAGTGACTGCAAAAACATCACAGAAAGTGATGGTGGTAATTTTGATGTCGTTGATTGTAAAAAGAGGGAAGAAAACGCTTACAAAACATTAAGCTTTGGTCTCGACACAAACCAACACGTGCAAAgcgaggaaaagaaagaaactgagAACATTTTAGCAGGGATTAAAACAGGTGAATCAGCGAATGAATATTCAAGAGATAATCCTGGTGCTTTGAAATTCGCAAGCGTTTCTGACGCAGATGTAGGGATTGTTGAGTTTGTTAGCAGACTTCCCGGGTTCCATGGCATTTTAAAACAGAGGTACACAGATTTTATCGTAAGCGAACGTGATCCAGAAGGGAGCCTCGTACGTTTAACAGATGTCTCACttccacaaaaagaaaagacaaagcAATTTAATCTTGATATTCTGAGTCCAGAGGATAGAGAGAAAATTCAGCAAGTAGTTGATGATGAAACGAAAAGCAAGTCAGTGATTTTATCGCCAAATGATGACAAGGGAAACCGTACTTTGGTTCATCGTGCCATCCGAGAGAATTTCTCCATGTTAGACAGTGATACAGTTGATGTAGAAAATCAGAAAGCCGTCAGAGTCTTTCACAAGCAAGATTCAACtgggaaacaaaggaataatCGCTGGCCTCAAGAACTGGACAATTACTGCTGGTTTGTGCTTTACAAGGAAAACAAAGACACTATGGATGCAATAAATCTGTTAAGTAAACTTTTGAAGATCAAAACAGGTGTTTTTGGTTATGCAGGAACAAAGGATCGCAGGGCTGTAACAACACAGTGGATTTCTGCCTATAGGGTGCGTGCAGAACAGCTCAAGTCTCTCAATTCCTCCTTGAGGAATTTATGCCTTGGAAACTTCAAGTATTGCAAAGAACCACTTAAACTTGGTTCTCTGTCTGGAAACCATTTTATTATTACACTTCGCAGCATTGTTGGAGATCACAGCAAGATTGAGGAGAGTCTGGAATCATTGAAAGTTAATGGCTTTATTAACTACTTTGGTCTGCAGAGGTTTGGGACTACATCAGTTTCCACACATGCAGTAGGTCTTGCGTTGCTTCAAAGTAAGTGGTCAGAAGCGATTGATCTGCTTCTCAATCCACGTGATGGAGAGTCAGATATCTTGACAGCTGCTCGTCAACACTGGAAAGACACTAAGAATGCTAAGGAAGCCCTACAAAAAATTCCCAAGGGAAAGTTCATTGAGAGTGATCTCTTGCAAGGTCTGGTACGGCACGGCCCAACAGGCCTTGTGAATGCATTGCAGAGCATACCGAGGAACACACGGCTTATGTACGTTCATGCATATCAGAGCTATGTTTGGAATTTCATGGCGACGAAGCGCATTAAGGAGTATGGACTTCAGCCAGTCAAAGGAGACTTAATTGTGAAATCTGCATCTTCCGTTGGGTGTGCAGAAAACGCAGACGTATCTCAAGCCGGGGGTATGGTACAATTCATTGCTGAGCCCAGTCGTAGCACAGTAACTGTTCTAACAGAAGATCACATCAAAAGCGGAGATTTTACAATCCAAGATGTGGTTCTTCCTCTTCCGGGTTACGATGTAAATTATCCTGAAAACAATATGAAAGATCACTACAGGCAGATTATGGCGAACGATGACCTTGATATTGATAACATGCGGCGAAAAGTGAAAGATTACGCCCTGTCTGGTGCATATCGGAAGTTACTTGTCAAACCCAGCCAAATGAACTGGCGTTGGTTTCGTTATAATGACATCAAAGAACCGCTGGCCTTAACTGATATGGACCGACTCAAAGGTGCTCAGGAACCACAGTCAGTTCCAGATGGAAAGTACTGGGCACTACAGTTGGGATTCACATTGCCGACATCAACGTATGCAACAATGGCTTTACGTGAAGTTCTCCGCTGTAATACGTCATCAGCCTACCAGGCGTCGCTAAATCAAGACTAAGGTCCGGTTTTCTATATTTCCAACCTCGTTCATTCATTGAGTAACATCATGGCACATTGTAAGGAGGGGAATGTCCATGTAACTTTGGATAGTATGTGTCTGTCGTGGCGTTTTATGAACACCACTacatctttgtgttttttttttagtggattctttaagcatttttttctttctttcataaGTTATCTCTTTGTGGCAGAAAGTGAATACCCACGAGTGCTGTTTGTAGAGTCTCTCCCGTAAACCACTATTTATTGCACATGTGCATAGTTATTCAGTTATTCcagctgttttcaaatttaccaAAGTCTGAATCAACCTGGAATATAATTCAAGTACACTTGAGGTCTCTGGTGAGTCTAAAATCGAAACGAAACAAGGAGTGTTGACCAACTTGAATGAGACCTGAAGGTAATAGCAATAGCACATGGAAACAATAGCCCATCTACTATAACATAGGTGGCCAAATATAACAATTTTGGAAGAACTCTGCTTAAATttactcttttttttaatgttaactaGTTTGATTTTGAGTCAGTGACTGTAGAAGACGCAGGTACTAAGAATTTAGTCTCCTCCCTTCGTGGGTTTATTACGAACTCGAAAGGCAAGCTCACAGTTTGCTTCAGTAAACTCTACTGGTAAAGCAGGGGTCATTTTAATCCTTattcaagcctgaatttttcaggctgtTGTTTCGTTACTACTGAGGGAAGTTACATTACTTTGGTGATCCTCTCTGTCTTACTCGTTTCAGCCTACAATCTCATTGGACATTTCCGGATTCTGCCATCGGATCCCAGAAGGAACATATCATGTTATGTTAACCCCCAAAAGTGCGCATCGCAGGGAAACAAAATAGAGAAATAAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91VU7	Pseudouridylate synthase 7 homolog OS=Mus musculus OX=10090 GN=Pus7 PE=2 SV=2
Q96PZ0	Pseudouridylate synthase 7 homolog OS=Homo sapiens OX=9606 GN=PUS7 PE=1 SV=2
Q08DI8	Pseudouridylate synthase 7 homolog OS=Bos taurus OX=9913 GN=PUS7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001686 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01142 all species →	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001656 all species →	Family	Pseudouridine synthase, TruD	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR011760 all species →	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan
IPR042214 all species →	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan
IPR020119 all species →	Conserved_site	Pseudouridine synthase TruD, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13326 all species →	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06176	truD, PUS7; tRNA pseudouridine13 synthase	EC:5.4.99.27	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.