Gene detail

Detailed information of ENSKKQP00000001802.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_015767392.1, PREDICTED: high mobility group protein 20A-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000002324

TGGAGAAACAACAACATTGCACGCGGATTCATCTTTGGCGAACGGAACAACATGTGCGACAGCTACAGCTCTAGCTCAAGTTCTAGACTCTCAGGCTATTTCCAGTAGCTCTCTTGCTACTTTCTCCGTTACTTCCGTGCCCGGTTCAGGAGGTCTTGCTGTGCTGACACCGACCCTAGATGGTACCACTACTGTAACGTCTCTACCGGGATTTACCTTGTCTAGTTTTGATCCTGTAGATGTGAAACATATTAATGAATCGCACGAGATGGCGGTAGCTACAGTTGGGGAGGATGGAAGTCTCCACTTTACAGCTGCAACTCACAATGGAGTTACCAATTATCATGCCACACAAGGAAATCAAACTCTGCCAACGTCTGAAGCTGATTTTGTATCAGACCTAAGTCAAGTCGAAATTCTCAGTGGTGGAGAGAGTGAGGGAGGCTCTTTAGAGGAACATGTTGGCCAGGAAACTCAAGTACCACAATCCATTGCTAACCCACATGGAGATGATAAATCAGTGAAGAAGAAAGGAGGATGGCCAAAGGGGAAGAAAAGACGGAAAACGTTTCGTGATACCAATGCACCTAAGGCTCCCCTTACTGGTTATGTGAGGTTTCTAAATGAACAGAGAGAGAAAGTGAAGGCAGAGAACCCTGAGCTTGCCTTTCCTGAAGTCACTAAATTACTGGGTGCTCAGTGGAGTAAGCTGTCTGTAGAAGAAAAACAGAGATACTTAGATGAAGCAGAGAAAGACAAGGAAAGATATATGGTGGAATTGGAAGCATACCAAAAAACAGATGCCTATAGAAACTTCCTtaaaaagcaaacagaaagaaaaaggaaaaGTTTGGAAAATCCGGATGGGTTGAATCCTTCGCCAAATGGGACTGAGCTCTGCGCAGAAGACGATCTTTACTGCAAACCATGTAACCAGTACTTTAACAATCTTCACAACAAGAGAGAACACATTCTCGGTCGTAAACACAAGCAAACGGTGTCAGGAAAATTAAGCGAAAGTGATGCCGAGGAGGAAGAGTTACCAGGATTTAACGCCCCTGTCTTTACAGAGGAGTTCCTAAAGCACAATGAAATGCGAGAAGATGAATTAAGACGTCTTCGGAAAGCAGCCACGGATTTTGAGGAACAAAATGCAGTCACCACCAAACACGTAGAGAACTTAAAACAAGCTATAGGAAAAATCGAAATGGAAACGAATCAGCAAAGGAACGCTAATATGGTATTGCTCAATCACTTAAGCCACCTCAGAACAGCTCTTGTCCAAGCATTTTCGAATCTTGTTCTTCCTGGTACCAATGAGGTACCTACCGTGGACACTATTGACTCTTATATGACGCGATTGTATTCTGTTATACTGGACTCGCCGCAAGAGAACGAGGGCCTTATTACCAATGTGCGAGAGATTGTCTCACGGCTTGGCTTTCCAAATGATACAGACAAAGGCGTGAACTTAACGGAATAGGCACCGCTCAGGTCAGCCCTCTGGTTTTCGTCCAGTCTGTAGTTGCTTCAAGATCGATCCCGCGTGGCGATTTCGTTTGACTGAGTGTGAAGTTAGAGGCAGATGGTGATGAATTTTCACATTGGTGATCTGTGTTAGTGATGCGTCCAGTTTCTAAACAATGCTCCAGTACAGAGATCTTAAATCCCAAAAGGCCAAATGTGCAATCACTTTGGTGTCGCATCGTTTATTTTTCGTCTCAAGGAAGTGGTCAAGAACTTTGCTAAGTGATGAAAAGTAACTAAGAGTAGGGTGAGGGAAAACTTGGGATGTGCTTCTCTCCTGGAGGCTGATAAAGGTTTCACTTGTCAAATTCTACAGACGGGGTATCCGTTGAGTTTAAAAGAGAATATTTAAACGCGGTGTTTTACTCCgcattcttttaatttctatATGAAAGGGTTGTCTCTCTCAACCAAAGGCCTTTGTGCACATCTCTTGTTTACTTACATAAATTGGCCGTGGCTTCTTATTTGCACTAACGGTAACTCATATTATTTCAGATATAATATACATacaaaaatttctgcattctgattggcacAGAGCATGTCAATtcatcccaaacagtgcaaaaacttgaattttcttgagtgcagaaagacgaaattagtgcaaaaagttgaaattaaagaTGATTGTCAGGTACCtttaaaaacagtaacaaaaagcTTAATGGCGGACAGGTTTGCTGAGAGCAACTACACCTTaattcaaagtttaaaggataatgccaaaaacataaacacgcaacaaagtacaaacaactggATAAATGTTTGGACCAATCGGATTCTTGTAGGCGGAGCGTGTTAACCCCttaaggcaaaataaaaacaaactgtcagctgtttgtctgaaaattttgtACGTATATTATTAACTAGTAATCACATggtttttctcgtgcaatttgaaataaataag

Protein

Uniprot

Gene family

Uniprot term	Description
Q9DC33	High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1
Q5ZKF4	High mobility group protein 20A OS=Gallus gallus OX=9031 GN=HMG20A PE=2 SV=1
Q9NP66	High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051965	Family	Chromatin Regulation and Neuronal Gene Expression	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46040	HIGH MOBILITY GROUP PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24660	HMG20A; high mobility group protein 20A	-	Chromosome and associated proteins	ko03036	deepkoala