Gene detail

Detailed information of ENSKKQP00000001834.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029187602.2, E3 ubiquitin-protein ligase COP1-like isoform X1 [Acropora millepora]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

ENSKKQT00000002365

ATGTCGCAGCTGTCACAGTCGTCGAGTTCGACCTCGTCCGCACAAAGTAGGGGAGGACGTCGACGGAAAAGACCTCATCCTCCAGTGTATGGCGGTATTATGAACTCCTTTAGCGACAGGAACAGTGACTTTGTTTGTCCGATATGTTTTGATACCATCGATGAGGCTTTTATGACAAAATGTGGACATACATTCTGCTATGAATGTATAACTCGAAGCTTGGAGGAAAGCAACCGCTGTCCCAAGTGTAATTACATCATAGACAAGCCTGATCAAATATTCCCAAATTTTCTCTTGAATGAACTTGTGCAGAAAGTGAAAGAGAGATCTGGCCAAAAAAGGGGTAAAGTGACTCCCAAGTCACagTTGCAGGGTTCAGTCAATGGTATTCAAGAGATTTTGTCAGGAGAAATTGAGTGGGATTTAGCAGATGTAAATTATGTGCTGGATGTATTGACACAAAAGAAGCAACAGCTGGAAGCAGATAGTCAAGCTGTGCAACATGAACTTCTAAAAGATTTTCTGTCACAAGTCAAGCGGCATAAGCAAGAGCAATTGGATCAGTTGACAAGAGAAGTCAAGCTCATTGATGAAGACATGAAAAGAGTAAAAGAAATGATAGCATCACATAACCGACAATATCCACTGCCAGTTCCTTTGACTCTGCCAGGGGCTGAACGTCTCTTGGTCAATGATGTGGATCATGCTGTTCCAACTACACCCACCGCAAAAACTGCTCCACTTGCAGTCGGATCTGATGTGGAACCTTCCACAAGtCATGAATACCCCTGCGATCAGACAGAAACTGCTCAAGATGGCTTTAATGGAAGCCAGCATGGAGCCAAGCATTTCTTGTGTAGCACCAGTTTGGCTTCAAGAAGAAAACGAATTCATCAACACTTTGATGACCTTGAGAGATGCTACTTTTCCATCAGACAGGGAGACTTTCCAAGCGATACTGGTACATCAGATGCGTTGGATTATTTTACGGATAGTCTTGCAAAGTTTACAAAGTTCAGTGGATTTCGCTGCTTAGCTACACTTAGCTACGCCAGTGACATTTACAATGGATCGAGTATCGTTTCAAGTATTGAGTTTGACCGCGATTTTGACTACTTTGCAATTGCTGGTGTTACCAAGAAAATCAAGGTGTTTGAATATGGCACCGTGATCAGAGATGTAGTGGATATTCACTGTCCTGTCAATGAAATGGTCTGCAATTCAAAAATCAGTTCCATCTGTTGGAGCTCGTACCACAAAGGTTTACTGGCCAGTAGTGACTACGAAGGCACCGTTACACTCTGGGACGCGTTTACAGGATCAAAAACCAGGTCTTTTCAGGAACACGAAAAAAGGTGTTGGAGCGTGGATTTTAATCACGTGGATCCAAAACTACTCGCCTCCGGATCTGATGACGCGAAAGtcAAGCTTTGGTCGACTGACATGGAACATTCCGTCGCCTGTTTGGAAGCCAAAGCAAATGTTTGTTGCGTCAAATTTAATCCCGAGAGTAGATATCACTTATCGTTTGGATCAGCGGATCATTGTGTCCATTATTATGATTTACGGAACACTACGCTGCCAATAACAGTTTTTAAAGGTCACAGGAAGGCAGTGTCCTACACCAAATTTATCAACACTGAAGAAATTGTATCTGCATCAACCGATAGTCAGTTGAAATTGTGGAATATAAGTAAGCCGCACTGTCTTCGAACTTTCAAAGGCCACATCAACGAAAAGAACTTTGTTGGACTAGCTTCCAATGGAGATTATGTTGCCTGTGGAAGTGAAAACAACTCGCTATATTTATACTACAAGGGCCTTTCCAAACAGTTACTCACATTTAAATTTGACACTGTGCGAAGCGTTTTGgaaaaagacaagaaagaagATGACGCTAATGAATTTGTAAGCGCCGTTTGTTGGAGAACTGGTTCTAACGTTGTAGTGGCTGCAAATAGTCAGGGCACCATAAAGGTTCTGGAGCTGGTTTGA

Transcript

ENSKKQT00000002365

CGCATTGGACGTGAACTTTATCGAACAGGAATTGAACTTTAGTATTAACGTTGGCATGCGGTggaagttttcttgttttcaacgTTGCCGTTCTGGGAGTGCGTATGCCAGCTGGGCTTTAGAATAAACGTTATTCTATTCTTAGATGTGAGAGTGGACTAAAATGTCGCAGCTGTCACAGTCGTCGAGTTCGACCTCGTCCGCACAAAGTAGGGGAGGACGTCGACGGAAAAGACCTCATCCTCCAGTGTATGGCGGTATTATGAACTCCTTTAGCGACAGGAACAGTGACTTTGTTTGTCCGATATGTTTTGATACCATCGATGAGGCTTTTATGACAAAATGTGGACATACATTCTGCTATGAATGTATAACTCGAAGCTTGGAGGAAAGCAACCGCTGTCCCAAGTGTAATTACATCATAGACAAGCCTGATCAAATATTCCCAAATTTTCTCTTGAATGAACTTGTGCAGAAAGTGAAAGAGAGATCTGGCCAAAAAAGGGGTAAAGTGACTCCCAAGTCACagTTGCAGGGTTCAGTCAATGGTATTCAAGAGATTTTGTCAGGAGAAATTGAGTGGGATTTAGCAGATGTAAATTATGTGCTGGATGTATTGACACAAAAGAAGCAACAGCTGGAAGCAGATAGTCAAGCTGTGCAACATGAACTTCTAAAAGATTTTCTGTCACAAGTCAAGCGGCATAAGCAAGAGCAATTGGATCAGTTGACAAGAGAAGTCAAGCTCATTGATGAAGACATGAAAAGAGTAAAAGAAATGATAGCATCACATAACCGACAATATCCACTGCCAGTTCCTTTGACTCTGCCAGGGGCTGAACGTCTCTTGGTCAATGATGTGGATCATGCTGTTCCAACTACACCCACCGCAAAAACTGCTCCACTTGCAGTCGGATCTGATGTGGAACCTTCCACAAGtCATGAATACCCCTGCGATCAGACAGAAACTGCTCAAGATGGCTTTAATGGAAGCCAGCATGGAGCCAAGCATTTCTTGTGTAGCACCAGTTTGGCTTCAAGAAGAAAACGAATTCATCAACACTTTGATGACCTTGAGAGATGCTACTTTTCCATCAGACAGGGAGACTTTCCAAGCGATACTGGTACATCAGATGCGTTGGATTATTTTACGGATAGTCTTGCAAAGTTTACAAAGTTCAGTGGATTTCGCTGCTTAGCTACACTTAGCTACGCCAGTGACATTTACAATGGATCGAGTATCGTTTCAAGTATTGAGTTTGACCGCGATTTTGACTACTTTGCAATTGCTGGTGTTACCAAGAAAATCAAGGTGTTTGAATATGGCACCGTGATCAGAGATGTAGTGGATATTCACTGTCCTGTCAATGAAATGGTCTGCAATTCAAAAATCAGTTCCATCTGTTGGAGCTCGTACCACAAAGGTTTACTGGCCAGTAGTGACTACGAAGGCACCGTTACACTCTGGGACGCGTTTACAGGATCAAAAACCAGGTCTTTTCAGGAACACGAAAAAAGGTGTTGGAGCGTGGATTTTAATCACGTGGATCCAAAACTACTCGCCTCCGGATCTGATGACGCGAAAGtcAAGCTTTGGTCGACTGACATGGAACATTCCGTCGCCTGTTTGGAAGCCAAAGCAAATGTTTGTTGCGTCAAATTTAATCCCGAGAGTAGATATCACTTATCGTTTGGATCAGCGGATCATTGTGTCCATTATTATGATTTACGGAACACTACGCTGCCAATAACAGTTTTTAAAGGTCACAGGAAGGCAGTGTCCTACACCAAATTTATCAACACTGAAGAAATTGTATCTGCATCAACCGATAGTCAGTTGAAATTGTGGAATATAAGTAAGCCGCACTGTCTTCGAACTTTCAAAGGCCACATCAACGAAAAGAACTTTGTTGGACTAGCTTCCAATGGAGATTATGTTGCCTGTGGAAGTGAAAACAACTCGCTATATTTATACTACAAGGGCCTTTCCAAACAGTTACTCACATTTAAATTTGACACTGTGCGAAGCGTTTTGgaaaaagacaagaaagaagATGACGCTAATGAATTTGTAAGCGCCGTTTGTTGGAGAACTGGTTCTAACGTTGTAGTGGCTGCAAATAGTCAGGGCACCATAAAGGTTCTGGAGCTGGTTTGATACTACTTTCTTGACAAAAATGAACAAGTGTATATAATTCTGATGCAGGAAGGGATGAATGGATGAAAATAACGCAATAAGTTATTGCAGTCGCTGTTGCTGTGTACCAACAAGACACATTGGAAAGCTTTAGTTTtccgagaacgagaacgagGACGTGTACAAGTTTTGTCCTTGAGAGGTCTGGTACTCTGTTTCGTCGTCGTCTTCGTGCTGACGTAATTGTAACtgagattgaaaacaaacagttCCGCGTTCTTCATCCAgtcttttttgtgtgtttttacgGAAAACGTTCGTGCTACGACCTCAGTAATGCTATCTGAGGAGGACATACTTGACGAGGACGTCTTAACGATTTTTAATGAAATGGAAGTGCAAAACTCACCTTTGAAAATCTCGTTCTCGTGAAGACGACTTTTCAGTGTCCAAGAGCGGCCCACAACGAGTTTCCCACCAGCGTTACATTTAAGGGACAGGTACGTATACGGACCATGAAAGCAAGCAAAGTCGTATTGGTCGTCGTTCTCGTTCTCGAATCTATGAACGCTCTCTATTGACGAACATCTTGGCATTTGCTGAAAATTGGTGCTATTGAACCATTCTGACTTTGTCAAGAAACTgaccatattttgttatttttgtttttgtttttcggtAAGCCCTTTCGATGGACTGCAATCATCgattttttggaaatatttcgaTGAATTAAAACTGTGCGGTAAAATTTTATTGAGTGCATTTCGGTGTACTTGTACTCAAAATCAAACCCCTCTCGAGTCGCTCAATTTTTTCATAATACTGTGAGAATACAATATCGCTCCAATGTTATCAATGTCGCTATTATATCTCTCTGTAAATACTTCAAGACAAATTTATTATGAAGCACCGGGCCAGTGCATTTACAGGCTTAATATATGAACTACTTCTCTTGTGAATTGAACCCACTGCAAGAGAGGTGTTATTTTCCACTGTTACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1A8	E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2
Q8NHY2	E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1
P93471	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006674 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042755 all species →	Family	E3 ubiquitin-protein ligase COP1	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44080 all species →	E3 UBIQUITIN-PROTEIN LIGASE COP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10143	RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.