Gene detail

Detailed information of ENSKKQP00000004852.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_015747111.1, PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q922K7	28S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nop2 PE=1 SV=1
P46087	28S rRNA (cytosine(4447)-C(5))-methyltransferase OS=Homo sapiens OX=9606 GN=NOP2 PE=1 SV=2
O94268	25S rRNA (cytosine-C(5))-methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09004	ALKBH8_N	Alkylated DNA repair protein alkB homolog 8, N-terminal	Domain	Interproscan
PF01189	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015095	Domain	Alkylated DNA repair protein AlkB, homologue 8, N-terminal	Interproscan
IPR049560	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR023267	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR023273	Family	RNA (C5-cytosine) methyltransferase, NOP2	Interproscan
IPR018314	Conserved_site	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0000470	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0009383	Molecular Function	rRNA (cytosine-C5-)-methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15264	NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase	EC:2.1.1.311	Ribosome biogenesis	ko03009	deepkoala