Gene detail

Detailed information of ENSKKQP00000006943.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029201199.2, polycomb protein SCMH1-like isoform X2 [Acropora millepora]
Species abbreviation AAUST · all data for this species · gene families

Sequence

CDS

ENSKKQT00000007946

ATGTCGGGAATCAACGAAGCCGTACGGATACCTGACAAACAGGATGGAGAAAGACTTAGCGAAGAAATGAAGGACTATGCCAAAAGTACTATGAATGAGTTGTTGGGGATGTTTGGCTATGAGGAAGAGATCACTCGCGAGGCTGTAGAGGAGCTACAAATCAAACTATTGCCAGAGGCTGATGAAAACATACAGCAAATGGGAAGCGAACCTTTACAAATGGAGAAAGATGTCTCTGTTACAGGGGAGAATCAAGTTCTTGTACAAATTCCTGGTGTACAAAATAACAACAGTTTAGCGTTAGAACCTGTGCCAGAATTGGATAATGCAGTTACTGTTGTTCGTCGTGGCACACAGAGTCTTGTAAACATTCCAAGTGAAACCATCAAGGAAGAACATGCTCTGAAAAAGGCAACGAATGATGCTGCCAGTACCTCAAACTTGGGTgataaaaaagGTGTAGAGATAACATCATCCACAGCTTTACCTGGAAAACCATCCAGGAACTGTTCATGGTGCAAGAAATCTGCTCCTTTGAAAGACATAACTTCCTGTGATGGTGAAAAGGTCATCTCTTGTAAAAATGTGTGCTCAGCAGAGTGTTTTGAGCAAACTGTCAAATTTATCAAGGAAAGTCAAAGTAATGAAGGCTCTTTGCAAGCTCAAAAGTTACCTGGATCAATCAAGACAGTTAAGCCTGGGCCATCAGCTCCAATAACACGACAAGCTTCAAAAGGACCACCAGCTGTTCTAAAATATCTCTTTTCTTGGGATGAATATCTGACCAAGACAAATTCAGCTGCAGCTCCATGGAGTTTTTTCAAACAGTCGTCAACGCCTCCTTACAATGGCttccaaaagaacatgaaacTAGAAGTGGCTGATCCCAGGATAGTTGATATCATGTGTGTTGCGACAGTGGTGGGTATCTTGGGACCAAGGATAAGATGTCGATTTGATGGTACAGATAGTGCTAACGACGTGTGGCATCTGGTGGATTCAAAGCAGATTCACCCCGTAGGGTGGTGTGAGGGCAACGGCGGACGGCTTCAACCCCCTGTTGGGTTCAAGCTTGACCCCGGAAAGTACTCAACATTTCTTGCAAAAACACTGGCAAATGCTGAACTGGCACCTGTGCGGCTGTTTAAACGGGAACCAGCTCCTCCCAAGGGAAACCTCTTCAAGGTTGGGATGAAATTGGAAGCACTGGATCCTAAAAACCCGTTGCTCATCTGCGTGGCTACTGTTGCTGGCATCGATGGCGACAAAATCCGCGTTGATTTTGATGGCTACCTCGGGTCAGATTACTGGTGCAGATACGATTCCCGGGATATATTCCCTGTTGGGTGGTGCCACTACAGCGGCCATCCTCTGCAACCACCAGGACAAACACGAAAAGCTTTGAAACAGTCGAAcgtcaagacaaaagaacaaCTGGAAAAACCTACCAAACCAGAAAAACccgaaaagcaaaataaaaagaaagctCCAGAAATCTCTGCTGTGACATCAGTTTGTGCAGCAACAGCCCCTGCCCCCACCCCAACAGTATCCACATCTTCAAATACTCGCAGGGAACCGCTGACACCCGACACAAGCGCCGACGCCATGGGAACGAATCATACAGTTCAAGTGTTTATTAACCATTCATGTGTCCCAGGCCCTTTTCTCGATGTGGCAAAGGTGGCCTGCTTGCCAAGCTGCTTTCGAGGCACTGTCCCGAACGTAGCAAGAGATTGCTTTCAATCGATTGTGAACGCGGGCATTGAGCCCGCCAATGTCTTTAGAGTTTTTAAGCCAGGAAACGGAAAAACAAGGATAACATGCAAGAATGGGAAACAGAGTTTGAGTTGCCATTTGCAAGTCATGGACAGGGTGTCGCGATTTTGGAGTGTGCTGGATAAACTTGCTGAGAATCTACAGTGTTGTGTTAACCTGTTCTCCGGGGAACGAATTACTGGACTCTGCTCCAAATGCGGTAGAAACGCGTCAAGACGCAATACTGTTTTACCAGAAACGTTTCCCGTAGCTGCAAAGAAAAGTTCCACACCCATGGCCAAAAGAGGCGCGTATAAACAACGACAAGGAAGGGCTAAGCGTGCGCGGATTACCTATGACAAGGGGACACCTGATGATGAAGCCAGTTCTCCAACAGTCGATTCAACATCTCCCCTCAAAACATGGTCTGTGGACGAGGTAGTAAAGTTTATGGAGAAATCTGAACTTGCAGAACATGCAGGGATGTTCAAAGAACACGAAATCGACGGCAAAGCTTTGCTTCTTTTAACCCGAGAGATGATCATGTCTTACATGGGACTCAAGCTTGGACCAGCCATCAAACTGTTGGACTGCATAGAGGAactgaaaaccaaaaaatataCCTAA

Transcript

ENSKKQT00000007946

CGGATGAAACGGTCAACATAAATTAAAATCGTGCAGTTCCTTATGCGTGCACCAAGCAACGGAGGAGTCGAGTTGAGTTCTGAATAAAAGTAAACACTCTTCTAGGCCTAGTGATAGCTAAACCACTCGAAAGGAACGCCGCTCCCTGAAAGAGTGAAGAAACGAAAAAACACGAGAGCGCCGTTCAGCTTGGGCGGCCATATTGGAGTTACGTGTTTGCTGGTTGTAATGTCGGGAATCAACGAAGCCGTACGGATACCTGACAAACAGGATGGAGAAAGACTTAGCGAAGAAATGAAGGACTATGCCAAAAGTACTATGAATGAGTTGTTGGGGATGTTTGGCTATGAGGAAGAGATCACTCGCGAGGCTGTAGAGGAGCTACAAATCAAACTATTGCCAGAGGCTGATGAAAACATACAGCAAATGGGAAGCGAACCTTTACAAATGGAGAAAGATGTCTCTGTTACAGGGGAGAATCAAGTTCTTGTACAAATTCCTGGTGTACAAAATAACAACAGTTTAGCGTTAGAACCTGTGCCAGAATTGGATAATGCAGTTACTGTTGTTCGTCGTGGCACACAGAGTCTTGTAAACATTCCAAGTGAAACCATCAAGGAAGAACATGCTCTGAAAAAGGCAACGAATGATGCTGCCAGTACCTCAAACTTGGGTgataaaaaagGTGTAGAGATAACATCATCCACAGCTTTACCTGGAAAACCATCCAGGAACTGTTCATGGTGCAAGAAATCTGCTCCTTTGAAAGACATAACTTCCTGTGATGGTGAAAAGGTCATCTCTTGTAAAAATGTGTGCTCAGCAGAGTGTTTTGAGCAAACTGTCAAATTTATCAAGGAAAGTCAAAGTAATGAAGGCTCTTTGCAAGCTCAAAAGTTACCTGGATCAATCAAGACAGTTAAGCCTGGGCCATCAGCTCCAATAACACGACAAGCTTCAAAAGGACCACCAGCTGTTCTAAAATATCTCTTTTCTTGGGATGAATATCTGACCAAGACAAATTCAGCTGCAGCTCCATGGAGTTTTTTCAAACAGTCGTCAACGCCTCCTTACAATGGCttccaaaagaacatgaaacTAGAAGTGGCTGATCCCAGGATAGTTGATATCATGTGTGTTGCGACAGTGGTGGGTATCTTGGGACCAAGGATAAGATGTCGATTTGATGGTACAGATAGTGCTAACGACGTGTGGCATCTGGTGGATTCAAAGCAGATTCACCCCGTAGGGTGGTGTGAGGGCAACGGCGGACGGCTTCAACCCCCTGTTGGGTTCAAGCTTGACCCCGGAAAGTACTCAACATTTCTTGCAAAAACACTGGCAAATGCTGAACTGGCACCTGTGCGGCTGTTTAAACGGGAACCAGCTCCTCCCAAGGGAAACCTCTTCAAGGTTGGGATGAAATTGGAAGCACTGGATCCTAAAAACCCGTTGCTCATCTGCGTGGCTACTGTTGCTGGCATCGATGGCGACAAAATCCGCGTTGATTTTGATGGCTACCTCGGGTCAGATTACTGGTGCAGATACGATTCCCGGGATATATTCCCTGTTGGGTGGTGCCACTACAGCGGCCATCCTCTGCAACCACCAGGACAAACACGAAAAGCTTTGAAACAGTCGAAcgtcaagacaaaagaacaaCTGGAAAAACCTACCAAACCAGAAAAACccgaaaagcaaaataaaaagaaagctCCAGAAATCTCTGCTGTGACATCAGTTTGTGCAGCAACAGCCCCTGCCCCCACCCCAACAGTATCCACATCTTCAAATACTCGCAGGGAACCGCTGACACCCGACACAAGCGCCGACGCCATGGGAACGAATCATACAGTTCAAGTGTTTATTAACCATTCATGTGTCCCAGGCCCTTTTCTCGATGTGGCAAAGGTGGCCTGCTTGCCAAGCTGCTTTCGAGGCACTGTCCCGAACGTAGCAAGAGATTGCTTTCAATCGATTGTGAACGCGGGCATTGAGCCCGCCAATGTCTTTAGAGTTTTTAAGCCAGGAAACGGAAAAACAAGGATAACATGCAAGAATGGGAAACAGAGTTTGAGTTGCCATTTGCAAGTCATGGACAGGGTGTCGCGATTTTGGAGTGTGCTGGATAAACTTGCTGAGAATCTACAGTGTTGTGTTAACCTGTTCTCCGGGGAACGAATTACTGGACTCTGCTCCAAATGCGGTAGAAACGCGTCAAGACGCAATACTGTTTTACCAGAAACGTTTCCCGTAGCTGCAAAGAAAAGTTCCACACCCATGGCCAAAAGAGGCGCGTATAAACAACGACAAGGAAGGGCTAAGCGTGCGCGGATTACCTATGACAAGGGGACACCTGATGATGAAGCCAGTTCTCCAACAGTCGATTCAACATCTCCCCTCAAAACATGGTCTGTGGACGAGGTAGTAAAGTTTATGGAGAAATCTGAACTTGCAGAACATGCAGGGATGTTCAAAGAACACGAAATCGACGGCAAAGCTTTGCTTCTTTTAACCCGAGAGATGATCATGTCTTACATGGGACTCAAGCTTGGACCAGCCATCAAACTGTTGGACTGCATAGAGGAactgaaaaccaaaaaatataCCTAAaagctttttccttttttttttcttgtgggCTTTCGTCGTTAGGCTTGCGATGTTTCCAGCAGGCTGGAATCTTTGTCGATGACCACACGGCGCTGTATATAAAATCCTCAATCACCCTCTTTCCCAGTTTGCTTCTTGACGCGAAACACGTACTTAACGAATCGGGATTGCAACTCTGAGTCTTGAATGCGGTATCTGTTCCATCGacaaactttttaaaattgtatCTTCAAATACGAATTTTTACTCAACTCCATACACGATAATAAATCGAATCCCGTCAAAGAATTGTCCACGCGTCCTTTACTCTCTCGTGGCAAAGTTGCCTTTCTCTCCATACCTGCATTTGGAGCAGAATTTTGACCATTCTATGATTTCCCTTTTCCTCTGTGTGTTTGATAATTTTCTGCGCCCCTAGTTTGTgtagtattctttttttttcggtggGAATGTCATGTTTTTCTGTGTCATCGTATTCGAAAGAACAATATCGAAGGATTTCAACAAAGCGATTTCTCGTTTCACTCGTGCTCGCCTTTCTTCCCGAAGAAAGTTAATTCACTTCTGTTATATTTTCCCGCAGAGCACAGTGTTGGAATAATGGCAGACGTATGATAGATTTCCGGCCGCGTGCAGGAATTTCGCTTATCTATCACTTACATTTCAACTCTTGTGGTGacttatttttataatttccaaGAAAGCTCTAATAATAAAAAGGGAATCTTGCTCACACAGTAATGCCACCCAAGTCTTGGCTACTATTGTTTGTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K214	Polycomb protein SCMH1 OS=Mus musculus OX=10090 GN=Scmh1 PE=1 SV=1
Q96GD3	Polycomb protein SCMH1 OS=Homo sapiens OX=9606 GN=SCMH1 PE=1 SV=1
Q9UQR0	Sex comb on midleg-like protein 2 OS=Homo sapiens OX=9606 GN=SCML2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002745 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12140 all species →	SLED	SLED domain	Domain	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR038348 all species →	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR021987 all species →	Domain	SLED domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11461	SCMH1; polycomb protein SCMH1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.