Gene detail

Detailed information of ENSKKQP00000007751.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029196698.2, transcription initiation protein SPT3 homolog isoform X4 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000009064

GGGAAAATAAATCGTTTCCGGTCATGTATTGCCTTGTGCCGTCAGACGTATTTTAGGGAAAATTTGCTGGAGGAACATGACGAAGTCCAAATCCAAAAGCAAAAAAGGCGAGAAAGGGAAGGAAGCTAGCACTTTGCCCAATTCCAGCGATAGCAAAGTATGCCTTTGGCGACTCAAGAAAACCTTCATCAGAATCAGCGACACTTATAGAACAAATTGTGCATTCACAAATGTCAAACATGGTTGTTCGAGCAGCTGAGGTGACAAATATGAGAGGTGGTAGATTCATGAGTGTTGAAGACATCATCTTTTTGTTGCGGAAGGACAAAgaAAAACTGAAGCGGTTAATCAGATTTCTCAATTTCAAGGAGCTGAAGAATAAATCTCAGAAACAAACCTCTCAAGATGACGATGAAGTGTTAGAAGCAACAGTAATTGAAAATAAAGGAAACAAAAGGCGGAAGATTTCTTATGACTTTGTTGGTGCAATCGATCAGACAGgTGAACTTCTGTCTttgtttgatgatgatgatattgatgaAATTAAACAAGAGAGAAATGAAAGAGCTGAGCGTTTGTCCCGCACCCTTGATCCTCAACAATATATGGAATTTACAGAATGCAGACAGACAAACTTTAATAAAAAAGCGGGGAAATTTAAGGAGTGGTTGGATTGTGCATCACTTATCGACTTAAAGCCCAACACACCAGTTATGGAAATCTTCAGCTTTCTGGCTTATGAGACTGTTGCTCAGATAGTTGACTTAGCACTACTGGTGAAAAAGGatactgaggaaagtgatgtaATGGTACAAGTCATGCCACCTGTCTCCATTTTATCAGAGAGCCAATCATCAATTGTCACACCAGGAACATCGGCCCCCTCTACCCCTAGCCACACCCCACCAGATACTCCCACCACGCCCACTATTCCATTTCTCCCGAGTCCTGGATCTAACAGTTCATCATCTACGTCACAGAATTCTTCTTTAGTAGCGAAGCCAaagagcaaaaagagaaaactcAAGGGTTCAGCTGCGAGTTTATCATATAGTAGTGGGGACTGCCTTCTTCCTCATCACATACGTGAAGCAATCAGAAGATACAACCATTATATAGGACCTATGGCTCCATTCTCAGCCCATGTTAAGCCAAGTGCTGGGTACAGAACCTTATGTTGTTAAGAGACACTGAGCAAAGAtaaattgtcaagaaaaaagtcCCGATGCATGGAGTGAGAGCTGCTAAGAAATGAATCAAAGAATAGCAATCAGATTTTACAAATGAAAGTTCCTTTGTTCTCAGTTATGTTGCCATGGTTCCTGTGTGCATGTAGCTTTCATTCAGGCAAAGAGTTCTGGTGACCTTCTTGTAATGATTTTTGATAAAGTACCCAAACTATAAAATAATATATCAATAATATTGATGTTTAGCAATTGAGTCATTTGTTACTGAACAGTGAGAATGTCCTCATGGTTGCATTAACTTAAAATGACTGTCCTTGTGAAAATGCTTCCCCCAAAAGTAGAACAAAATTAATCTTTACAATGTATTGACCTGTTTGTAACATTAGGCTGTCTACATCTTACAACAAAACTCATGCTTAGACAGCTAGTGTATTAATGTTTATTGAATacattttaaataataaattatgtataaaatataaattttcTCCACAGTGTTGATTCCACCATCTGCCATGACATTGACTTTTCAACCAACAGGGTTATAATTATTTCAATgcattaacaaaaaaaacaataattattattgttttttttgttaatgcATGGTGTTTCCATGATGGCGATCAGTAACTCTTGCTGGAGCTTCACAATGCAGGATAAAGAAGTGCCTCTTTTAGCAATCTCTTCTGCTCTGGGTTGAGTTGAGAAGGGAACTCAATGCTGAATTGAATAATCAGGTTCCCTTTTGTGTTTGGGTCTTTGGAGATGGGCATGCCCTCACTGGGGACTATCTTTTGATATCCAGGTCTATTGAAACAAGGCAAAATATTACCATCTACATCTAGAAAGCCATTGAAAAGTTTTGACGTGAACATGAGCAAGGTCCTACAGACTGATCATGAAatggtaataattattggtctATTTGGCATGGAAACCAAAACCATATTTTCCAAACTCTTAAGTGTCATTGCATTTTTACGTATATGTTCT

Protein

Uniprot

Uniprot term	Description
O75486	Transcription initiation protein SPT3 homolog OS=Homo sapiens OX=9606 GN=SUPT3H PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02269	TFIID-18kDa	Transcription initiation factor IID, 18kD subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003195	Family	Transcription initiation factor IID, subunit 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11380	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0043966	Biological Process	obsolete histone H3 acetylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11313	SUPT3H, SPT3; transcription initiation protein SPT3	-	Chromosome and associated proteins	ko03036	deepkoala