Gene detail

Detailed information of ENSKKQP00000009693.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029207704.2, DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000011377

ACTCTGGAGTCTGCTGCACTGCGCTCGGAATCGAGATCGGTGCTCGGTCGTCGCCAAACCCGAACTGCCCTATGGTATATGTTTTCAAGATGGCTGCAGTTTTCTTGACTTCAATGTCAAAATGCCTTTCTTTGAAGAGGGAAGCCCAGTTATTGATATGTGGCTGTAAGTTTTTCAGACAGGCAGGAGGCATGTCTACTAAAGCAACTGCTGTGAGACCAGGCTTACAGTCTCCTAGCAGATCTATAAAGCAAGGAAGACAGGTTAAACCAGTGAAACAATCATTGGATATGAAATCTGCCCTCACAAGGCAGCTAAAGAGGCGGAGAGAGTTGGCACAAAGAAGGAACCTCAAGTCTGTTAAGCCAAGAATAGCAGTCACAGAGGAATCTGTTTCCAGAGGAAGAAGAGAGATTGTAATTGAGCCATCTTGTCAGaaCCCTGCTTTCACACCTAAAGACAACCAGGCTCAAGTGAGATCATTTCACTCGTTGGGATTAAGAGATGACATTCTCCAGGGCTTAGATGGTCTCTCCATCACAAAACCAACTGTAACCCAGATGGTGACTATTCCTCCAATTCTCAATAGAAAGCATGTCTTATGTGCAGCCCAAACagGTACAGGGAAGACACTTGCCTATCTCTTACCGATAGTTCATCATTTGAAAGGAGAACATGACCAGGGCATGATATCACGTCTAAAGAGACCCAGAGTGTTAATTGTTGTACCAAACAGAGAACTTGCTCTCCAAGTGTTGAAAGTCGCAAAGTTATTAAGCCACAATGCGCGGTTTCGTTCAGCTCTTTTAACAGGAGGAAGAAAGCTGAGAATTTTGAAGTCTGGCCTTGAATCTCCCGTGGACCTTCTAGTTGGAACTCCAGGAACACTACTAGAATTTCGTGAGAGAGGTCGCCTGTTCTTCTCAGATGTGTCCTACTTAGTGATCGACGAAGCTGATTCCATGTTTGATGACACTTTTAAATCGGAGACGATGAAGCTTTTGGAGACAATCAGCATAAGACAAGGCAAATCCGTGCCCCGAACAAGCGATTTACCTACAGATTCAGTGGATGCTCAGGTTACCATTGTTGGCGCCACAATGCCAAAAGAACTGGTAGATACTCTCCAAGATATGCTTCTGGACTTACACATTTGCACGTCCAATCCACATCGTGTGCTTCCTCACATACGTCACAAGTTTTTGAAAACTCCACAGCATCTGAAACCAGACAAATTACTGGAAATTTTGAGACAAGACCTTCAAGTTGCTGATCGACGGACAATTGTTTTTTGCAACACAACACCAAGTTGCGACTACTTGGGACACTTTCTTCAAAATCATGGCGTCGAACCCATCAAACTCCACAGTACCGTTGCGATCCAGgAAAGACGTCAACGTTTCAAAGATTTTCAAAACGAGAAAGCACGAATTCTTCTTTGTACTGATGTCGCGTCCAGAGGCTTGGACACTAATgtacaTCATGTGATCAACTTTGACTTTCCCATGAACTTGACGGACTACCTTCATCGGGTTGGGAGGACTGGCCGCGTGAGGGCTGGAGCGAAAAACAGTGAGACCTCTGAAACCACGAGTTTCATGACACACAATAGAGATGTGAGAATGGCATTGATAATCGAGGAAGCTGCAAGGACGCAGCAGAGCGCGAAAACTGTGGAAGCAAACATGGCAAAGCAGTGGCATAAATCTCGCCCTGAACCTGAGGTCGCTCAACGGCGTGGAAGACATCTCAGGTCGCGTCAAGCCCCTGACATGCGCGTTCGTTCGACATAGCCGTGGCTAAGTAGTTAGGAAACACCCAAGATACTTTCAAAAAGCACAGCCTAATTCTTGTCATCTTAAGGTGAATGAAAAATGCTCTTGTATTGAGAATACTGAAATTAAGACCTTGCAAAAGAAGTTATGGTGGATGTTCTGCGATTCCGCAAGGAAAATACAACATGCGTGACATCTATCCAAGAAGTTGTATCAGAGAGTCTTTCAGAATGAAGCGTCACATTCGGACTTTCTTCAGATATCACAT

Protein

Uniprot

Uniprot term	Description
Q56X76	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2
Q5VRY0	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1
Q9NUL7	Probable ATP-dependent RNA helicase DDX28 OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan