Gene detail

Detailed information of ENSKKQP00000010177.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029189344.2, TNF receptor-associated factor 5-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSKKQT00000011883

GCTGAGCTTTATGGTCGCTTGATTCCTTTCTGTCATTGTCATCAGTATAGAAAACCTCCATCCAGCGCGTCCTATCACACGAGAGTGAACTCAAACTGTTTTCAATGCCTTCAAAGTTACCCTAAATGGAGCCGCATTCATCCCCGCTTTTTCAAAGCGATTCAAGCCGCGCGCATTTCAGCCGTGCAATCCAGTGAAAGCCCTCACGATTACCCCGCCAACTTGCGGGAAAGTAAAGCCCACCTTGATGCTATGAAAGATTTGCACCTTCAGCTCGCTTGCAGGGGACTTGTAACTATGTCCAAGACGGTCGCAGAACAAGCTGAGAAAATAGCACTCTTGGAAGAAAAGATGGAACGTCTCCAACATTCTCCATTCGTATGGAAAATATCTAACTTTTCAGCAGTCATGGAGGCTGCTCGGACAAACCAACAAAGAGTAATAGTTAGCGATCCTTTTTATTCATCCAAAAGTGGTTACAAGTTAGTCCTGGAGCTCTACCCAGATGGTTACCACGCAGAGAATAATGAGGAAGATGAAAAGGTCGATTTCATGTCGATATATCTTCGGATTCTGGTCGGAGAATATGACGGTCGTCTTGTCTGGCCCTTTAAATACTCTGTCGTTATTTCTTTACTTAATCTAAACGAATTTGCTAGGAAAAGAAGACATTTAAGTCAAGAGGTTCAATTTTCGGAAACCGAGGGACTTCCAAGGCCATATCAAGGAACCGTAGAACCTGCCTGTGGTTTGTGGAAGTTCGTACTCCATTCGGACTTGTATTCTGGCTCATATATCAAAGATGATACGATTTTCATCAAGGTAGCGTTTTCGGATCACGCAATACGATACGCCCTATTATTATATCTGAATACCATGTCGGCAGCTGTATCCGAGCTCGGAGGGTATGATTATGAATTTGTAAGCAAAGTCCCTGAAGATTGGGAATGTCTAGTTTGTAATTTAACGATGAAAGACCCCGTTCAGATTGTGGGTTGCGGTCATAGAATGTGCAGCATCTGCATGGAGTCTTTACGTCCTTCGCCAAGATGTCCTGCTGATCGACAGCCTCTGTCACGCAACAAGGTATTTGCCGATGCGGCTTGTTACCGAAAAATTCTCGATCTTATCGTCAACTGCTCGCATTCTAGATGCCCCTGGAAAGGAGAGCTTCGCTTTGTGGAGAAACACCAGACGAGCTGCCCTTTCAAAGTTGTTTCGTGTCCAAACTCCGGCTGTGAAGAGAGGCTCACCGAACAGGACTTGGAAGTACATATTTTGTCTGAATGTTCTTGGAGAAGAACTAGCTGCAAATACTGTGGAGTATCGTTCATATACAATCAAAAACAGAAGCACCTTGCTGCTTGTAAACAGTTTCCAATTCAGTGCACGAACAAGTGTGGCTTGTGGATTGTCCCACGAGGAAAGCTTGTGGCTCATATTCATGACGATTGCCCTAAAACAGAAGTTCCATGTGAATTCAAGAACTTAGGCTGTTCAGCAGTGTTTCCCAGATCCGATGCCAAATTACATTTAGCCTCGGAAGTCGACCATCACTTGTCCTTAGCTCTCCGCGGGCTAGAAGCAACTCAACATCAGGTGCGCGCACTCACCAGCCTGGTAAAAGATCAATCTGAGGAAATAAGACGCTTGGAGAAGATGTCTGAGAAGTATGCCCCGTACGTATGGAAGATATCCAACTTTCAAGCAGTGCAGGAGAGGGCGATCTCAGGACAACAGGAAGCTTTACTCAGTGAAGCCTTTTATTTGTCGAAAAACGGGTATAAattgaggatcaagttgttACCAAACGGGGGTTTGATTCCCGGTGAATACGATTCGATATTGACGTGGCCTTTCGACAAGAAGATTCGTATTTCTTTGATCGATCAAGAAGTTAACAAAGAGAACAGGGTAAATGCAaccaaaattgtttattttcagtATGACAGCCGTCCCTGTCCTCAGACTGAACCTGAAAATGGATACGGATTTGGTAATTTTATACATCACAACGATTTACAAACCCGAAAATACTTAAAAAACGATAACATTTTCATCATGGTCAGCCAAGCATAA

Transcript

ENSKKQT00000011883

Protein

Uniprot

Uniprot term	Description
Q28DL4	TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1
P70191	TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan