Gene detail

Detailed information of ENSKKQP00000010739.1 in Acropora austera

Genomic Location: chr11:21569184...21597866
NR annotation: XP_029189495.2, uncharacterized protein LOC114956524 [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSKKQT00000012448

ATGCCATGTACAGTTTTAAATTTTGACATAGAGATTAACACAACCGaaattttcattctttgccttccTTTTACAATGCGCTCTGAGGACGAGGTGGGTTCTCTCTTTAATTCCCGTACTCTTGTCGGTTTGCTAACAGAATACCGAGGGGTAAGGAGGGATGTTTGGGAAGGACTCAACGGTGGTTGGTTCTTGAATCACCTGACTAAAGACAAAAGATTTCCTAATTCGCCCTCACGCGTTGAAATTCTACGGACGTTCACACCACCCCGAAACGACGATAATTACTATGGTCAGCGGCTGAGAGCTTTCTTCATACCGCCCTTCAACGGAAACTACACGTTTTTTGCCACATGTGACTCCGAGTGCGTCTTCTATTTAAGTTTTGACGAAAGGCCTGAGAACAAGAAAGAAGTACTTAAAATTGATCAGAGCCGTAGGACTGGGTACGATCAGTGGGACAGGTATCCTCAGCAAAAGTCATGCATACAACAGTTGGAAAAAGGAAAGTTGTATTACATAGAGGCACTTCATTCTAATTACATCAGCGATGATCACGTACGTATTCACGTCAAATACCCCGGATCAAACACTACTACTACATTGGATATCGAAGATCTGTTCCTTTTTTCGCCAGGCTCCTCACTTCAGGCTACCTGTGTCTTACTCAGACGATGTGAAGTAACCTGCGGTGGAGGACTGCGGACGCGCATCAGACCAGTATCACAATCATGTGCAAAACGGGACCCGCCTTCTTTGCATATAGAAATATACAACATCACTCATTCAACAGCTGTGGTTGGTTGGACACCTTTTTTAAAGAACGAGTCTGGTGTAATCAAAGTGTCTGGATACAAAGTCAGTGTGAAGTCTCAATACGATAAAAATCTAGTAAAGCGAGTTGACGAAAACACCAGTTCGTTGCTCTTTGAGGACTTGAAGACTTTTGAAAAGTACTGCGTCACTGTGGAACCGCTGACCGCCTTGACAGGCGCTGAGAAGGGGGATTGTCATTACTTCATTACAAGGGAAAACTTCCCAAGTCTGCCACCACAGGATGTCACAGTAAAGTACCATGAGCCATTTTCCTTACTTGTGAATTGGAAACCTGTTCCTAAAGATCACCGAAACGGCGTCATTCTTGGTTACAGATTGACTTTGAGATCCATTGGTGCGATAAATCTTCAAAGGCCACCAAAAGGCAACGAAACGGAAATGTGGCAGCGAGAAATGACTGTGTTGGGCCCAGGTGTATCATTGGTTGAACTTCGTGACGTCAAAGCCTTCACGTGGTATTGTGTCAATATTCTGGCCTTCACGAGTATAGGGGATGGACAGGAGAGTTCTTGTGTTTTTGTACTGACAGGAGAAAGTGtTCCCAGCCGGCCTCCAGTAAACGTCACGACCACACCACTGAATTCCACGTCATTTCTCGTTGCCTGGCAATCATTACCTCTGCAATACGCCAATGGAATCATTATTGGTTATGTAGTAGCGCtgaaaaacatggcggacgggTCACAGTTGCTGAATGAAACAGTGAATGTAAATCAAACTGAAGTAACCTTAAGTCGACCTGAAAAAGTGTCGAGGTTTTGCGCAAAGGTCCAGGCTTTCACACAGGCAGGACGAGGAAAGTCAAGCAGTTGTATTGAAGCTTGGAGTTGGTCAAAAGAGACGGTGTTTCCTGATATGACAGCTAAAAACCATGGCAGTCCTACTGGTATAACAATCACGTGGGAGGCACCACGTGACCAAGTCATCCATAAACTTTCTCACTATCACGTGACTTATGAAACAATCAGCGAGGCTGGTCGACCTGTGTTAAATTCTTCGCGATTTTCTTTGAATGTGAGCGCCAATTCCAGGCAACTTCCACTTGACGGTCTTGAGACGTACACCACCTACAAGATACAAGTCGAATCTGTTGGTTTAGATGGAAAGGTGCAAAACAGCAAAGTTTTCTTCGTAGAAACTTGTCGCTGTCCCAGCATACTGCAAGCTAACTGGATTCCAAGCGCCCCTTACGTCATCAGAAACACGTCGACATCAAATCCCAATGGGATACTTCCAGAAATACTAAGTCGCATGCTGCTTGACTCATGTGGGACCTGTTTAAGTTACAAGACATGGAACATAAGTTACGCTATCAACACAACCCTTAGCGTAACTACGCCTGACAAGGATTTCCTCGTCGACTTCCGTTTCCCCGTGCGATCGGCGGTTGGAAGGACAATATACCAAGGGGTTTATTCCTATGTCCCGCTTATAACTGTCCCCGGCGTCGCGCTGTTGTCACGAAAGAAGACGCCTTCTGGGTATGCTAGGGACCTGACACATTCTGTATACAGTTGTTGGCCTGTATTCGCTATGAGCTTTGTTCTGGCAATCTTGACTGGAATAGTTCTATGGTTTGCGGAGTACGACACCAATTACAGGCAGTTCTATCGTTCTTTCCCCAAAGGCATTTTGGAAGGAGTGTGGTGGTCATTTGTCACCATGACAACTGTGGGCTATGGAGACAAGTACCCCAAAACGGTCATTGGACGATCGATCGCCATCGTCTGGTTTCTGACTGGAATCGTCCTGTCTTCTCTTTTTATCAGCTCTCTGACATCCTCAATGTCCGTTAGGATTCTGGACGATCGTTTAGATATCGTTCGTGGTAAAAAGGTTGGCTTCCTTCCTCAATTTCCAGAATATGACATCGTAATAAAACGCATATCGACAGCAGGAGGAAGCAAGACCTACCCTACCCTGGAGCTGCTGTTCGATGCTCTGCGGTCCAACGAAGTTGATGGCATCTTAGTGGATCTTTACACTGCGCACTACAGGAGCGATCTTTTCAACGCAACGTGGATAACAGTCAGTAGAATAATCCCCTACGAATTCACCATTGGGGTAGTCATCACAGGAAATGCAGAAAAACTAGTGCAACATTTCAGGGATTACATTGGAAACGAGACTACTGTGGTCACCGAAATTCTGAAGAGAAAGAATGAACAAATGCCCTTGCTGGATCCGAGAACAGACGTTTACAAGATGTTAATTGTCACGCTGTTTCCTCTTCTGTGTCTAGCTGTTTGCACTGGACTTGTGTATCATTTCCAGTATAAGAAGTCACTAAGACGCCGATATGATATGCAAGGAATACGAGTGAATAacacaaaacaagaacttcggCAGATGGTGGTTGAATTTTACGAAAGATTTTCCTTGATTTACAAACGATTGCGCTTAAAACATCTCAGAGAGCTAAAGCGTTTCAAAGAAATTCACGCCGCTAAAAGTTTCAAAGCTGTGGAACACTCAAACGGCAAAATCTCCAAAAGTCTGCTAAATGGAAACTGGGTCTAG

Transcript

ENSKKQT00000012448

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSH7	Voltage-gated potassium channel regulatory subunit KCNF1 OS=Mus musculus OX=10090 GN=Kcnf1 PE=1 SV=1
D4ADX7	Voltage-gated potassium channel regulatory subunit KCNF1 OS=Rattus norvegicus OX=10116 GN=Kcnf1 PE=1 SV=3
Q9H3M0	Voltage-gated potassium channel regulatory subunit KCNF1 OS=Homo sapiens OX=9606 GN=KCNF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004352 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR037524 all species →	Domain	PA14/GLEYA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000010739.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora austera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora austera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →