Gene detail

Detailed information of ENSKKQP00000011773.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029191248.1, LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein L-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000013484

TGCGACCCTTTTTTAGTGGTTGCACGTTCTCTTTGCTGAGTTCCCACTCATTTCCACTAAATGAATCGGTGCTTCCCTCCATCATAGAGAAATTGTAGACTTTTTAGTATACTGTGCGGAAAACAGACTCAGTAATAGCTAATTTGAAAGCGCCATGGGACGATAGAAAGAATAAAGCATCGGGCGTTTAGACGTCGATTTCAAAAAATACCGCCACTCGGTAACCGCTGGCGAGCCCCGGATCCAGATTTTGACACAAATGATTTCTGGGTAAGATATCAGGCAGGCAAGGTGAAATAATGGCGGATAATATCGGGGGTAAGCATTCGTTGGATGCCGAAAGTGGGTATGAATACGACAATGGAGATTTGAAACGCATTAAACTGGAGTCAGGAACCAGTGGAGGACCAGGGAACCCACATTACCAGCAACCGTCGCCAGTAATTCATGTACGTGGCGTTGCAGACGAAGCACGTGAGCAAGACTTGCTACATTCTCTTTCGACATTTGGCCCAGTTAGCTGTATTACAATGATGCCAAAAATGCGACAAGCTTTGGTTGAATTTGAAGACATTGAATCTGCAAAGGCTGTCATGGAATACACAGAGGGTGGAAGTGGAGAGAAAAATTTAATTGTTCTTTGTGGCAGGCCTTGTTACTTTAATTATTCCAAAAGCAAGGCAATATCAAAAAACCTCAACGTGCCAATAGAAAACCCTCCATCCAGGATTCTCCTGATCTGCATTATAAATCCACAATATCCAGTAACAACAgaCATTCTTTACACAATATTCAGCAAACAAGGTCATGTTTTAAAGATTGTGATTTTCAGGAAGAGTGGGTTGCAGGCAATGGTGGAATTTGCCACAGTAGAGCAAGCAATGCAGGCCAAAGATAACTTAAATGGAGCTGATATTTACACAGGCTGCAACACTTTGAAGATTGAATTCTCCAAGGCGGATTCACTCAATGTTTATAGGAATGACGAGAATACATTTGATTACACACAGCCTGACAAACCACCAGGACCAGGTCCAGTTAGACCCCCAGTGAAGGAAGGTCTACTCAGTCCTCCCCCGAGGCGTCCATTTCCTCCTCGTCGTGGGGGCATGAGGATGCAAGCACCCAGGCCCTTCCTTCCTCCACGACCACCGGCCATGGAAGGGGCCCATGTTATCATGGTTTATGGTTTACATGAGAGCAAGATGAACTGTGACAGACTCTTTAATGTTCTTTGCTGCTATGGAAATGTTCTCAAGatCAAATTTCTGCTGAACAAGCCAGGCACTGCTATGGTTGAAATGAGTGATCATGTGGCCTGTAACACCATCATACAGTGTCTTGGAAAACAGAAGCTTTTTGACAAACAGCTTGATGTCAGTTTCTCCAAGCAGAAATACCTCGTACATCCTACATCGGTGTCAAATTTAGATGATGGGACACCTTGTTTCAAGGACTTCTCTGAGTCAAAGAATCACCGATTCTGGACAGAGCAACAAAGCAACAAGAACCGTATATTCTCACCCACTaaagttttgcatttttttaatgcaCCTCCTGACTTTTCAGAGGAGAAGGTTCATGAGATGTGCTCCATTTGCGGTGTTGAACCCCCACCAAGagtaaaaatatttccaaatgCTACTCGCTCAGCATCTGGTTTGCTCGAGTGGAATGACCCGTTCCAGGCTTTGGACGCCATCGCAGCCTGCAACCATTACGTCATTCGCGATCCAGctGCCAGGACAATCTTCACCGTAAAGCTTGCTTTTTCGTCGATGTCAAGCACTTAGTAAGACTATGGAGATTTTTTCAAAGTGGAACCAGACCGTCGGCGCAGCGTCGATGTCGGCAAACGGTCTTGCAAATGGTTTGAAGCGAAGAGGGGCATAACCTTGATGGCGTCTGATCTTCCAGCTGATTGTAGTGTTGAGAAGGACTGTTCTTGGTTTTAACCGCCATACCTGAAGTGGTGTTCAGAATTAACTTTCACCTGAACTGGAAgtgatcttcagagtcaagtgatgaCTTCCGCTGAGAAATCGAAGTCGAAATGTCATTCACCGACAGCAGTCCTTCCCTGGACTTCACTCAACTCGGCGGACGATCATATACCATCAAAGTTAAAGGGCTTCGTGTTCAAACTTCTTGCCTCTCTAGTAGTCCATACACGAAGTAACATGCAGTCATATACTAACGACTGCAGTTAGGAAGGACATTTATTCAAGAGACAAGCGTTAGCGTAAGGATTAAGTGTATACGGTATTTAATAAGTGATGTGACATTTGTATTTCTCGGTAACTGCTTTATTAGAGCACTGTCCTTACGTAAAGGTCTTTTACCGTTATAGTTGTAAAGCTTGTTTCATGACGCACCTTTTCTTTGGTTTAGTGGAAGTTGATAACACCTCCCGTAGGAAATAAAATTGTAAGGCTATAAAGCCTATGGATCGTTGCAAATTGTTTTCTGTTCTGAACCGGTTATATTGTTGAATGGTTAAAG

Protein

Uniprot

Uniprot term	Description
P14866	Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2
Q8R081	Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus OX=10090 GN=Hnrnpl PE=1 SV=2
F1LQ48	Heterogeneous nuclear ribonucleoprotein L OS=Rattus norvegicus OX=10116 GN=Hnrnpl PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13893	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13159	HNRNPL; heterogeneous nuclear ribonucleoprotein L	-	Spliceosome	ko03041	deepkoala