Gene detail

Detailed information of ENSKKQP00000012140.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_044174721.1, LOW QUALITY PROTEIN: alpha-actinin-1-like [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

ENSKKQT00000013928

ATGGGAAAGACAACAGAAAAAAAAATCGTGGATGGAAATCTTAAAATGACCCTCGGTATGATTTGGACGATAATTTTGCGGTTTGCCATCCAAGATATATCTGTTGAAGAAACGGCTTCAAAGGATGGCTTACTTCTATGGTGTCAGCGAAAAACAGCGCCATACAAAAATGTTAACGTACAGAATTTTCACACAAGCTTTAAGGATGGCTTGGCATTTTGTGCATTGATTCATCGTCATCGTCCGGACCTGATAGACTACAACTCGCTGAGTAAGGAAACTCCCTTGGAGAACCTGAATTATGCCTTTGATGTTGCTGAGCAGCATTTGGACATTCCAAAAATGTTGGATGCTGAAGAAATGGTCAGCATGGAAAAGCCTGATGCAAGAGCTGTCATGACATATGTGTCATCTTATTACCATGCATTTACAAGCTCGCAGAAGGCTGAAACAGCTGCCAAGCGTATCGGAAAAGTGCTCACCATAAACAGAGACAACGAGAAGATGATGGAGGACTATGAGAAAATGGCCAGTGATTTGCTTGACTGGATCAATAAAACATTACCATGGCTCCAAGATCGTAAAAGTGATGGAACCTTGAATGATATGCAGAACAAGCTGGATGCACTGCGAGTTTACAGGAGAAGTGAAAAGCCTCCAAGAGTGGAAGAGAAGGGAATGCTGGAGACTAACTTTAACACCCTGCAAACTAAGTTACGTCTTGGAAATCGACCTGCTTACCTTCCCACGGAGGGAAAGATGATCAGTGACATAAATCGTGCATGGGGGAATTTGGAAGGATCTGAAAAAGATTTTGAAGACTGGTTATTGAAAGAAATGAGAAGAATGGAGCGCTTGGATCACTTGGCTGAAAAATTCCGACACAAATGCAACATTCACGAGGCTTGGACATCTGGCAAGAGTGACATGTTGCAAAAAGATGATTTGGAGAATGCTACCCTAGCTGATGTCTTGGccttaaaaaagaaacatgaaGCATTTGAGAGTGACTTGGCAGCCCATCAAGACAGAGTGGAACAAATTGTAGCAATTGCTCAGGAACTAAATGCGTTGGGATACAGTAAAGTTGAATCAGTCAATGCAAGATGTCAGCAAATTTGTGATGAATGGAGAAACCTTGGCCTGCTCACAGAAGATCGCCGATCCACGATTGAGACACGCGAGGCAGTGCTGCAGAAGGTAGACGCTCTGTTACTCGAGTTTGCCAAAAGAGCAGCCCCGTACAACAACTGGCTGGAGAGTGCAAGGGAAGATTTGATGGACATGTTTAGCGTGCACACAGTGGAAGAGATTGTGGAACTACAGGATGCTCATCAAGTGTTTAAGGATAACATGCCTGCTGCACAGAACGAGTTTGATGCTATAATGTCCATAAGCCAGGATATAGAAAAAGTGGGCGTTCACGAAAACCCTTACACTAGTCTAACAAAGGAGGAAATTAATTTAGCCTGGGATGAAGTACAAAGTTTGGTTCCTAAGAGAGATGACTtgctcaaaaatgaaaaaggccGCCAAGAACGAAATGAAACTCTACGTGTTGAGTTTGCAAACAAAGCAAATTCAGTTGGTCCGCGGATCAAGAGCCTCGAGGAAAGATTACGATCAATTGCTCTAACGATGGAGGGTCCGTTAGAGGATCAACTGTTAGCTGTGCAAGAACTTGAACGCGATGTGGCAAACTACAAGCCACAGATGGATGAACTAGAGCTAGTTCACCAGGATGTCCAAGAAGCAATGATCTTCGAAAATCCTCACACGGAGTATACCATGGAAgCTCTGCGCGTCAACTGGGAGCAGTTACTTACTGCCATTGCTCGAAATATCAATGAAATCGAAAATCAGATACTTACTAGAGATTCCAAAGGCCTTTCCGAGGATCAGATGAAGGAGTTCCGTAATGCATTCAACCATTTTGACAAGgATAGAAGCATGCGTCTGGAACCTTTGGAATTCCAACAGTGCTTGTACAGTTTAGGATATGAtgtgaaagaaaaagataagGCGAACGAAGAATTCGCACGAATCATGGCAATTGTGGATCCAAACAACACTGGATATGTGACATTCCAAGCATTCCTTGATTTCATGACCAGAGAAACTGCTGACACTGATACCGCTGATCAGGTTATGGAATCATTTCGAATTCTCGCCGGGGACAAGCCGTACATCACTACAGAAGAACTGCGACGTGAGTTGCCATCCGATCAAGCCGAGTATTGCATTGCCAGAATGGCTCCTTATGAAGGACCAGATGCCATCCCTGGTGCGTTAGACTACATGTCATTCTCAACTGCATTGTATGGAGAGAGCGACTTGTAG

Transcript

ENSKKQT00000013928

GAGAGTACACTGGTGATGTTTGGAAGGTTTGATCAGTAGAATCGGGCTCTCGAGAGCTTCGAGGAGTGAATATCATTTGTGCAGTTTCATAGCAGCGTATTTCTTACATTTACGATGGCTACAGATGACGAAGAATATTACGGCTATTATTATGGCGATGACCAAGATAGAGGGTTGCTTGATGCTGCATGGGAAAGACAACAGAAAAAAAAATCGTGGATGGAAATCTTAAAATGACCCTCGGTATGATTTGGACGATAATTTTGCGGTTTGCCATCCAAGATATATCTGTTGAAGAAACGGCTTCAAAGGATGGCTTACTTCTATGGTGTCAGCGAAAAACAGCGCCATACAAAAATGTTAACGTACAGAATTTTCACACAAGCTTTAAGGATGGCTTGGCATTTTGTGCATTGATTCATCGTCATCGTCCGGACCTGATAGACTACAACTCGCTGAGTAAGGAAACTCCCTTGGAGAACCTGAATTATGCCTTTGATGTTGCTGAGCAGCATTTGGACATTCCAAAAATGTTGGATGCTGAAGAAATGGTCAGCATGGAAAAGCCTGATGCAAGAGCTGTCATGACATATGTGTCATCTTATTACCATGCATTTACAAGCTCGCAGAAGGCTGAAACAGCTGCCAAGCGTATCGGAAAAGTGCTCACCATAAACAGAGACAACGAGAAGATGATGGAGGACTATGAGAAAATGGCCAGTGATTTGCTTGACTGGATCAATAAAACATTACCATGGCTCCAAGATCGTAAAAGTGATGGAACCTTGAATGATATGCAGAACAAGCTGGATGCACTGCGAGTTTACAGGAGAAGTGAAAAGCCTCCAAGAGTGGAAGAGAAGGGAATGCTGGAGACTAACTTTAACACCCTGCAAACTAAGTTACGTCTTGGAAATCGACCTGCTTACCTTCCCACGGAGGGAAAGATGATCAGTGACATAAATCGTGCATGGGGGAATTTGGAAGGATCTGAAAAAGATTTTGAAGACTGGTTATTGAAAGAAATGAGAAGAATGGAGCGCTTGGATCACTTGGCTGAAAAATTCCGACACAAATGCAACATTCACGAGGCTTGGACATCTGGCAAGAGTGACATGTTGCAAAAAGATGATTTGGAGAATGCTACCCTAGCTGATGTCTTGGccttaaaaaagaaacatgaaGCATTTGAGAGTGACTTGGCAGCCCATCAAGACAGAGTGGAACAAATTGTAGCAATTGCTCAGGAACTAAATGCGTTGGGATACAGTAAAGTTGAATCAGTCAATGCAAGATGTCAGCAAATTTGTGATGAATGGAGAAACCTTGGCCTGCTCACAGAAGATCGCCGATCCACGATTGAGACACGCGAGGCAGTGCTGCAGAAGGTAGACGCTCTGTTACTCGAGTTTGCCAAAAGAGCAGCCCCGTACAACAACTGGCTGGAGAGTGCAAGGGAAGATTTGATGGACATGTTTAGCGTGCACACAGTGGAAGAGATTGTGGAACTACAGGATGCTCATCAAGTGTTTAAGGATAACATGCCTGCTGCACAGAACGAGTTTGATGCTATAATGTCCATAAGCCAGGATATAGAAAAAGTGGGCGTTCACGAAAACCCTTACACTAGTCTAACAAAGGAGGAAATTAATTTAGCCTGGGATGAAGTACAAAGTTTGGTTCCTAAGAGAGATGACTtgctcaaaaatgaaaaaggccGCCAAGAACGAAATGAAACTCTACGTGTTGAGTTTGCAAACAAAGCAAATTCAGTTGGTCCGCGGATCAAGAGCCTCGAGGAAAGATTACGATCAATTGCTCTAACGATGGAGGGTCCGTTAGAGGATCAACTGTTAGCTGTGCAAGAACTTGAACGCGATGTGGCAAACTACAAGCCACAGATGGATGAACTAGAGCTAGTTCACCAGGATGTCCAAGAAGCAATGATCTTCGAAAATCCTCACACGGAGTATACCATGGAAgCTCTGCGCGTCAACTGGGAGCAGTTACTTACTGCCATTGCTCGAAATATCAATGAAATCGAAAATCAGATACTTACTAGAGATTCCAAAGGCCTTTCCGAGGATCAGATGAAGGAGTTCCGTAATGCATTCAACCATTTTGACAAGgATAGAAGCATGCGTCTGGAACCTTTGGAATTCCAACAGTGCTTGTACAGTTTAGGATATGAtgtgaaagaaaaagataagGCGAACGAAGAATTCGCACGAATCATGGCAATTGTGGATCCAAACAACACTGGATATGTGACATTCCAAGCATTCCTTGATTTCATGACCAGAGAAACTGCTGACACTGATACCGCTGATCAGGTTATGGAATCATTTCGAATTCTCGCCGGGGACAAGCCGTACATCACTACAGAAGAACTGCGACGTGAGTTGCCATCCGATCAAGCCGAGTATTGCATTGCCAGAATGGCTCCTTATGAAGGACCAGATGCCATCCCTGGTGCGTTAGACTACATGTCATTCTCAACTGCATTGTATGGAGAGAGCGACTTGTAGCACTGGCGGGGTATAGAATAGAAGTAGCAAAAATTGCATTAACTACAGCTTTTATATTAGTATGCTTGTTAGGAGTGGGTGGTTTTTGCTTCGggaatattttgtttctgaaaaaaaaaatccaacagtGTAGCCTTTTCTATGTCTTATTGTTGTGGTGGACCGTTTTTTTAGAAATTCCTTTATCAGCCGACGAGCGTCGAAAATAGGAAAGGTGATATTTTCATTGTCGAAAGAGTTAGCtatagtaatttttcttttctttttcgttttcataTAACATCTTTAAAAGTGTCATAGATCATTTTTTCGTTGCGTTTTTGATCTAGTTTGCCTCGTAGCGCCTAAGCTTAGTAAGAAGCAAAAGATCAAACTTATGGGTAAATGGTATTGTTGGCGCAGGTAACATAAGCAATTGCAATGAAATTGCTGCTGTCGATGACATCACAAACTTATAAGCgttatttttgtcaaaagtaAACGAAAAAAGCACATTTCAGTGAGACCGCACTAGTACCAACTAAGTATTTGCCTATCTCCAAGACTTCCTTTGTACCTTGAGACGTGGTATTTATCTGCTGACATGGGATTTCATTAACCGCAGGCATTTCGTTTGAACCGTGGTTATTGTGGTAAATAATTTAAACCGGACTGAAAGCTTAAATTAGCTTAAATCTGTGTGCGAACTATACAACAACTATAGCAATGTATCAGCGCTAGAGAAACCAAAGCGGTTTTTGTATCAATGCATTGAAGCAAGTTGTTCAGCAGATCTTTTTGTACAGGTCGAGGCTAAATGCTTTAATTCTCAATGTAGAGTACGTACTGGAAAGTAAAGATAAATAAAATGCAAACCTTTGATTGCGCTGATGTCCTTTGTATTTGCACGCGTTATACTGATGGCCAATCATGAGCGAAGGAGGCCTGGCAGTAGATAAAGTCATATCGTGGATAATTCTAACCGTGAATTCCCCTGCGTAGCTAACTGTGCATAAAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P05094	Alpha-actinin-1 OS=Gallus gallus OX=9031 GN=ACTN1 PE=1 SV=3
Q3B7N2	Alpha-actinin-1 OS=Bos taurus OX=9913 GN=ACTN1 PE=2 SV=1
Q2PFV7	Alpha-actinin-1 OS=Macaca fascicularis OX=9541 GN=ACTN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002750 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05699	ACTN1_4; actinin alpha 1/4	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.