Gene detail

Detailed information of ENSKKQP00000012258.1 in Acropora austera

Genomic Location: not available for this species
NR annotation: XP_029189812.2, all-trans-retinyl ester 13-cis isomerohydrolase-like isoform X2 [Acropora millepora]
Species Acropora austera · all data for this species · gene families

Sequence

CDS

Transcript

ENSKKQT00000014063

ATTCCATTCAATCATGGCTGCTTCACCAGACCAATCCATCATTTTCCAAACAGCAAACGAGCGTCCTGAGCCAATCCAGGCTCAAATGAGAGGCAAAATTCCATCCTGGCTGAGGGGAACCTTGATAAGGAATGGACCCGGGCGATTTGAATGCGGCGACACATCATTCAATCATTGGTTTGATGGGCAAGCGCTTCTGCACCGATTTTGCATCAAAGACGGCAAAGTAACTTACAGCAACAAGTTTGTGCGAAGTCAGAGTTATGCTGATTCCCTAAAACATGGAAATGCTTCCCATCTAGAATTTGGATCATATATACCGCCAGATCCCTGCCAAAACATCTTTTCTCGCTTCTTCTCTCGTTATTGGGGGGCAGAAATGCCCTTTGACAACACATGCATTAACGTCTTTCCAATGAAGGAGAAGATGTATGCAACCACGGAAAGTGAATTCCTATTTCAGATCGACCCGAAAACGCTAGAGACATTGAAAAAAGTGGATCTGGCAAAAGAATTTCCAGCTGACGTCACAATCAGTAGCATGACAGCCCATCCCCACGTGACTCCAGACGGCTCAGTGATAAACGTCTCCGCGACATTTGGGATGAGCCCCTCATACAACATCATTTGCGTTCCACCCTCCACGGGAGAAACTCGAGAGACCCCTTTGGAGGGAGGTAAGGTGATTTGCAGCATTCCACCAACCAGTGGCATCGGATACCATCACAGCTTCTGTCTCACAGAAAACTTCATAGTTGTCACTGAAGTTCCTTTGATGTTAAACGTCTGGCGAGTTCTCGGCCACAGATTCTTTGGGACCAGTTTAGAAGACTGGCTCTACTGGGATCCAAAACAACGCACCAGATTTCATGTCGTCGACAGAAAAAAGGGCGACCGCGTTGGAGTCTTCACGGCAGATCCGTTCTTTGTGTTTCACCACATCAATGCCTTTGAAAAAGACGGCAAAATTCATGTCGATGGCTGTTGCTATCGCGATAACTCGCCTGTGAAGCAGTTTTATTTGCATAACTTAAGATCCCCAGCAGAACCAGGTCAAAAGAAGTTCGCCACTCAGTATGTACGTCGCTATGAGCTCCCTATGGATAAACTAGGGAGCGTAGAGGAGATGCCTCTCCAGAGGGGAGGGGACggaaaggatttttttttgctttttatagGCATGGAGCTTCCTAGAATCAACTACGAAGAATACAATGGCAAACCTTACAAGTTTGTTTATGGGGTTAGATCGCCAGACCACCACGTAGTGTTTGGAAAAATTGTCAAGATGAATCTGGAAACCGGGGAGTCAGTCACATGGGAGGAGCCAGGAGGTTTTGCTTCAGAGCCTGTGTTTGTCAAAGCGCCTGGCGGCAAAGAAGAGGACGATGGTGTCATTTTATCTTGCGTCATTAATGTTGTTGATCAAACCACCTCTCTGCACGTTCTGGACGCGAAGGATTTAAAGGAGCTGGGGCGGGGCGTTGTGGAAGGTGTTACGCCAGTGACGATACATGGTGTATTTCAGTAGCAATGACAattacattaataataattacaatattaattgataattattaataataattacaataacaaTTACATCTAACAATTAACCGTTCATTTCAtgatttgaattgaatttgTATTAAGTAAACAGTTAATTTTGACAACTCTGCACAAACATTAAATATCTTTTACCGTTCCTAATTTTAGTGAGTTGTAAAGTTCCCTAAAGTATTTACTTTTCAGGAGTACTCAATGAGAAAAAATTTGATTTGTTATTGGCTCGATCGATTGCTTGACAGTCCCTGAGTGTTCTTTGGTTAACTCATTAACTCTCGTGGGAAAATTTTATCCGCTCCTCAGAGCCAGCTAGACGAATCATATAAATGCACTTTGAGACGTTACTACCGGCCAACAATTTTTCTGGCCTTCTTTTTTCCCAGAAAATTAGTTATATATGTCTTTGCCAGCCaggaaaataattaaaagaCTATTTCTCAGATCTACATTTACAATTGTATGTAACGTATTTGGAATGTTTTGAGTCTGTAGTTTTGTCAACGTGAGCACAAACACATATGTAAATACATGCTgacttaacaaagatttctctTACCACGTTATTATGGCTAGTTATCCAATTCTTTTTCAGTGGTCAAGGATTACATAGAGATAAAAACGTGGTCGAAGGTACCTTTAAACTTCAACAATAAATAGTTTAGCTGAAGAGCCCTTaacatagaccactttcataaatggcggcgcattttgttattcctttgtatgtatgttaattagacctactggcctcactttggtttaaatattctttagaattttgcccatggcagtgaggctaataaggcttattagcattaaaacaaaataatattaaataggccatttccgtgTTCACCtaagcctccatttcaaagcgaggctaagtgcgaagtcctTGTTATGAaagtcagttttcattcatattgaaattggaactaattatcataacaaaagtttcgcactt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9C3R9	All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio OX=7955 GN=rpe65b PE=1 SV=1
A9C3R8	Retinal Mueller cells isomerohydrolase OS=Danio rerio OX=7955 GN=rpe65c PE=1 SV=1
Q99NF1	Carotenoid-cleaving dioxygenase, mitochondrial OS=Mus musculus OX=10090 GN=Bco2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03055 all species →	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR004294 all species →	Family	Carotenoid oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543 all species →	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003834 all species →	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744 all species →	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0010436 all species →	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121 all species →	Biological Process	carotene catabolic process	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSKKQP00000012258.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.