Gene detail

Detailed information of ENSKKQP00000014359.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029208356.2, REST corepressor 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000016366

CAAAGTGGATGGGAAGAATAAGGATGCATCCAATGAAATGGAGCTTGACAATAATCAACACGTGTCCAAAGTAGATAGTGATAGCGATGGAGAATATCATGAACCCGGTATGCGAGTTGGACGCGAGTTTCAAGCCATTATTCCGGACCTTGTTTCAGAAAGTATGCTTCAATTGCTTTATGTTTACGTTGTGTTTTTTAACTATAATTATGACTAATTGCTGCTATTCTTTCTCTTTAAAACCAACGTCGGTGATTATGGAAAATTCTTCGTTATTTCCTCGGAAGAAGGCTCTTGGAATGCTGTTGTGGCACAAACACAACCTGGACAAGTCATTAACAGATTTGGCTAACTTTACTCCTTTTCCAGATGAATGGAGCATGGAAGATAAAATTCTTTTTGAACAAGCCTACAGTTCTCATGGAAAGAGTTTCAAGCGCATTCAACAAACATTACCAGATAAATCAGTGGCTACTCTTGTCAAATATTACTACTCttggaagaaaacaagaagTCGAACCAGTTTAATTGATCGTCAAGCAAAGAGAATGGCTGTTCAAAAAGAACCTATTAATGAACCAGAGAGTGACAACAGTGACTCAAGTGATAGTGATTTTGAACCTGAGAAGGAGACAAGACAAAGCAATGGTCAAAGCAAACCAAAACTAATAAACAAACAGCCACCAGTACAGggGACGCAACAGACAGCAAGCATATCAGGGCCTTGTGTTAACTGTCACACTCAATCCAGCCAGCTTCATTCCACACAAAAGGGAAATATGTGCAGTGCTTGCTATCAATTTTTAAGACGAACAGGAACCTTACGACAAAGACATGAGGGAAGAGAAACAAGAACTGGTCacagaggaaataaagttaagAGAAAGGCACCAAAGGGAATGGTTCTCTCGCAAGATTATCTCATAGCTGTATCTGGAACCCAGGGCGAAAGCCATGTGCGACCTCTTGATATGGAAATAGTGAATTTGAAGAGACAGATACAAATGAACAAGCAGTCAATAAGCCAAAACAAATACCAGTTGGACAGTGGAATCGAACTCTTCCGGCAAGGAGATCAAAATACCAAAAATAATGCCAGATGGTCAAATGAAGAATTGTTATTAGCTGTCCAGTCTGTGCGCCGCTACGGGAAAGATTTCCAAGCCATGGCTGAAGTGTTAGGCAACAAAAGTGTCAGCCAGTGCCGCAACTTCTTTGTGAACTACAAACGTCGTTTCAATCTGCAACAAGTTCTGGAAGAGTACGAGGCAGAGCAGGGAATAACCAGTAGTGAAAGAAAAGATGATGAGTTGCAGGTGCTGCAAATGTCAGGATCACCCGCTGGAAGCAGTGGAAATTCATCACCAAGTCAGCCTGACAGGGCCTCACCTTCTTTTCCAGCTCAGGGTATGGCTGGTCAACCTCCTCCTTTATTGAAACCTTCAGGATCACAGGCTCAGCGACATCCACCTCCAATGCAAACCCAAGGAGGGGTACCTCGGTCGGGCCAAGGTGGTCTCCAGGGTCCTCCACCACTGATAAAACCATTGGTCCGGCCAATTCAACCTCAGcctCTACGAGCTCAAGTCAGTCCCATGATGCGACAGTCGCCTCCATCTCATTTAATTCATCCGATGATGGACCAAAAATCCCCTGGGGTCCCCATGGGGAGATCTGAATCACCCCACAGTGTGACTGGTAGCTCTCCGCTAAGGCAGGCGCGCTCTGGTATTTAATGGCAACCATTCTCAAATCACTTCGTGCTGTATAATAATGTTTTGGTGAATTAGAATGACAGGGGTATGTAAAACTGTTGGATGTAAGCAGTTATTTTCACAGAATTTTCTTGCCTTGTTTGCAATTCTGTGTGCAATTATGATTAAATGCCTACAGTAGTATATAGGAAGCTTCTTAATGCTCGCAAATGATGGCTCGTGTTTGTCAGAAAATGACTGAATTAATTTCGTATACTAGAAGTAGCCATTAGGTTCACCTAAATCtaagtattatttttttgccaagGTATGATTACTCCTTTCCTAACAGCAAACCTATTTTAAAACGTTCACCTCAACATTTCACTTTTTATGTAATCCACAAATTATGTTAAATGAGCAGACCTGAAAGGCACGACATGATTCAAACATTGGTTTGACTCCCCAACtcttttgcatttgttttttggacaaaaatcaaaacaaaacaaaacaaaaaagcatccagttaataattgaaaattttgtATTCAAATGTTGGTGCACTGGTCCTCTGTCTTATGCCCTGAAGAATTGTGATAATAATCATTGTTAttagaacggttttcaaatgactgtcgaacaaccaaaaccaaagcaattactccgaccaatcacaacaggagcagacagcgcgatgaaccaatcacaattcctagcaattacctgtaactcgctcaaagcgcgggaaaaatgacgcgtacatggtgcgattggttttggttttgcttttcattggttgaaaaactggcgcgagtcttttaagccaatcactaagcgtagcgatcgcaatcacgtaatttctttcgacagtcatttgaaaactacgcTATTGCACTAGAATATCTGTTTGTGTCTTAGGAACTTGTTTTAATTAAGGAATTTAGTCTGAATTTTGTTGGTGATATTTTGTCGGTTGGAATGAGTTAGAAGTGAGTTATAATGCAAGGAAACGAAGCAAGTCCTACTTAGGAGTGGTAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9P2K3	REST corepressor 3 OS=Homo sapiens OX=9606 GN=RCOR3 PE=1 SV=2
Q8CFE3	REST corepressor 1 OS=Mus musculus OX=10090 GN=Rcor1 PE=1 SV=3
Q6P116	REST corepressor 2 OS=Danio rerio OX=7955 GN=rcor2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	MYB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20878	REST_helical	Helical region in REST corepressor	Family	Interproscan
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051066	Family	Transcriptional Regulator and Corepressor	Interproscan
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR049048	Domain	REST corepressor, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16089	REST COREPRESSOR COREST PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000118	Cellular Component	histone deacetylase complex	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26242	RCOR2_3; REST corepressor 2/3	-	Chromosome and associated proteins	ko03036	deepkoala