Gene detail

Detailed information of ENSKKQP00000017766.1 in Acropora austera

Genomic Location: :...
NR annotation: XP_029183196.2, cleavage and polyadenylation specificity factor subunit 6-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSKKQT00000020474

AGGAACATTCTTGTGCACGTGACGTTGTGCATCAGGCCGCCATCTTGCATTTCTCCTCACACGTTGTTTGGGTTGAGGAGTTAGCGTCTTCACAAGCAATGGCCGGAGACGGAGCTATAGATATCGATTTATACGCTACGGTAGATGAATTTGAGCCTGAGGTCGCTGGCCAGCATCACATGACCGAAGGATTGGATCTTTATGACGATGTTCTGACAACGGGAGGCGAGATGCCCGTGGAACCAGAAGACGAAGAATCACAGACACAGtaTGAAGAAGATGCTCCTGGTGAAATTCTAACAGAAGAGGCACAGTCAGGGGCGTACGAGTATAAGTCATACACAACAGTCCATCCAAAGTCAGCTGCCGCCCGTTCCTCCAACACTTACTATGAacgaaacaaaggaaaaccacTGTATGTTGGCAATCTGACGTGGtGGACAAATGATCAGGAGCTGACAGAAGCGCTTCAAGAATGCGGCGTCACTGACCTCATTAAtatcaaattctttgaaaacagAACCAATGGCCAATCCAAAGGATTTGCAATGATTGAGCTCGGTTCTGAGACGTCTGTTCAACTTGTAACTGAAAAGCTACCAAAAATGGAAATTCATTCGCAATTACCAATGGTTACACCAGCCACCAAACAATACTTGCAGCAGTTTGAAGCACAGTCAAGAAAAAATAATCCTAGCACCAGTGGTTCACAAGCAGAGCAAGAACCCCCACCTTACCAACAAGGGGGAGGAAGAGGGTTTGGGTACAATAGGGGTGGATTCAGAGGTCGAGGGTTTCCTATCCGTCCAGGGATGGGACAAGGGTTTGAGCATAGACCCCCACCGCCAGGTGATATGGGCCGTGGAGCACCTTGGATGGGCCATGGACATATGGGAATGCCAAGGCACCCTCCACCCGGTATGCCACCCTATCACATGGAGCATCCTCCGCCATTCTACCCGATGGTACCACCGCCTACTGCTGACAAGATGGCCGGACCAATGCAGCAACAAATGCATGTGCCACCACAGCCGCCTCCACCAGGAGCTTCTTCCTTACAAGACCATCGTCCGCCAGGCATGGTTCCACAGTTTCCGAAGCCTCCAGTTGCACCACATGTCAACCCAGCATTTTTTCCCGAGGGACCACCGCCAGAAACCTTCCTTGCGGCTGGAGCAGCTTCGGGTGTCAACAGAGTGGATGTGATGTCACAGTTTCTTCCCAGACAAGGGGACGATTTCAACGAGTCAATGAAGAGAAACCAAGTACTTGCCAGCACCGCTATCAAAAGAGCAATGTCAGACGCCAACTCGGGTGATTATGAAAGCGGCATAGAAACGCTAGTTGCGGCAATATCACTCATCAAACAGTCGCCGACAGCTTCTGAGGAGCGCTGCCAGGTACTTGTGCAATCTTTACAAGATTGTTATCAAGGACTGGAGATTCAGCTGCTAGAAAGAAGATCGACAGGAAGCAAACATCATTACAGCGACAAAGACGATTTTGAAAGTGAAAGCAAGGAGAAACGGCACCGGCGCAAACGCTCACGGTCTAGATCACGTGACAGGGATAGGAGATCAAGGTCCCGTGATAAGCGCTCGAGGTCACGCGACCGAGAACGTCGCCACCGAAGATGAGGCGGCAAGAACCTTTATGTAGCGGATTTGTTTCTACTCGATGTATTTTGCCGAAGAAAAATCTTACAACCCCTCGCCGTCAAGTAATCGCAAAAGAATGCCGCTGGTAGTTAATTACACTCTCTCATGAAGTGCATTTTGAGCGTTTTAACGATTTGAGTTTCAACGACTGACGGGCCATTATTTGTGCGTTCAAAGTCATTTTTCCTATAGGTAaattcagtttgtttttatcttcaaaGCAAGTTCAAATGCAAAGTCCTGGTGGGAACTCCTTGTTTCCTGTGCGACCTATTATTTTTCTCATACATGAACGAGGTCTAGTTGCTTTCGTCCGTTTTTGACTAGACACTGAAAGTGTTGTGTTATTTCCCTTCCTCGCACTGAATTCCTTGTTCTGTGTGGcttgaggaaaaataaagaaaacttaAATCGACGATTTTGATGCAATTGTCTATCTAGTTCTGTTCCAGTTCTTCGAAGTGAACTGGTTAAACTATGAACTGCGTGGCTCTTTCACGCACGCAACCTTTGCTGTTTTCCCAATGTTGGTATGGTTTC

Protein

Uniprot

Uniprot term	Description
Q6NWC6	Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1
Q5ZL34	Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1
Q0P5D2	Cleavage and polyadenylation specificity factor subunit 6 OS=Bos taurus OX=9913 GN=CPSF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034772	Family	CPSF6/7 family	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034769	Domain	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan
GO:0110104	Biological Process	mRNA alternative polyadenylation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14398	CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7	-	Messenger RNA biogenesis	ko03019	deepkoala